RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 SLC34A3Q8N130 599 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 ZCCHC10Q8TBK6 192 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 OR5M11Q96RB7 305 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 BBS4Q96RK4 519 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 KLHL31Q9H511 634 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 MAGIXQ9H6Y5 334 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 ZCCHC3Q9NUD5 404 aaKnown RBP12.76□□□□□ -0.37
VPS54-203ENST00000409558 TVP23BQ9NYZ1 205 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 SLC16A5O15375 505 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 PTHP01270 115 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 MRPL19P49406 292 aaKnown RBP12.76□□□□□ -0.37
VPS54-203ENST00000409558 MOGQ16653 247 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 GPAT3Q53EU6 434 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 SH3YL1Q96HL8 342 aaPredicted RBP12.76□□□□□ -0.37
VPS54-203ENST00000409558 SEMA3GQ9NS98 782 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 DPP7Q9UHL4 492 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 URB1O60287 2271 aaKnown RBP12.76□□□□□ -0.37
VPS54-203ENST00000409558 VPS13AQ96RL7 3174 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 ANHXE9PGG2 379 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 SLC9A3R1O14745 358 aaPredicted RBP12.76□□□□□ -0.37
VPS54-203ENST00000409558 ERI3O43414 337 aaKnown RBP12.76□□□□□ -0.37
VPS54-203ENST00000409558 DLGAP3O95886 979 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 PCMT1P22061 227 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 RXRGP48443 463 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 MAP4K2Q12851 820 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 TARDBPQ13148 414 aaKnown RBP eCLIP12.76□□□□□ -0.37
VPS54-203ENST00000409558 WSCD2Q2TBF2 565 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 TSEN54Q7Z6J9 526 aaKnown RBP12.76□□□□□ -0.37
VPS54-203ENST00000409558 OR10G6Q8NH81 332 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 REPS1Q96D71 796 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 EFCAB11Q9BUY7 163 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 TMEM165Q9HC07 324 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 GPR52Q9Y2T5 361 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 CLDN25C9JDP6 229 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 TMPRSS11DO60235 418 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 IFNW1P05000 195 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 ELAVL3Q14576 367 aaKnown RBP12.76□□□□□ -0.37
VPS54-203ENST00000409558 ZNF542PQ5EBM4 170 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 IRAK1BP1Q5VVH5 260 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 DCDC5Q6ZRR9 648 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.76□□□□□ -0.371e-6■■■□□ 17.2
VPS54-203ENST00000409558 KAT2AQ92830 837 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 FKBP10Q96AY3 582 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 H0Y8X5 98 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 AK4P27144 223 aaPredicted RBP12.75□□□□□ -0.37
VPS54-203ENST00000409558 TPP2P29144 1249 aaPredicted RBP12.75□□□□□ -0.37
VPS54-203ENST00000409558 ITGA1P56199 1179 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 OLR1P78380 273 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 B3GLCTQ6Y288 498 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 ZNF761Q86XN6 746 aaPredicted RBP12.75□□□□□ -0.37
VPS54-203ENST00000409558 KRT78Q8N1N4 520 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 OR4E2Q8NGC2 313 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 NACC2Q96BF6 587 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 COX4I2Q96KJ9 171 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 ZNF300Q96RE9 604 aaPredicted RBP12.75□□□□□ -0.37
VPS54-203ENST00000409558 YTHDF1Q9BYJ9 559 aaKnown RBP12.75□□□□□ -0.37
VPS54-203ENST00000409558 TOR4AQ9NXH8 423 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 ASIC5Q9NY37 505 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 C1orf226A1L170 272 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 PI15O43692 258 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 PBX2P40425 430 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 SOX3P41225 446 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 PTGES3Q15185 160 aaKnown RBP12.75□□□□□ -0.37
VPS54-203ENST00000409558 ARMCX4Q5H9R4 360 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 C6orf120Q7Z4R8 191 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 ZNF554Q86TJ5 538 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 ADAMTS16Q8TE57 1224 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 SLC38A5Q8WUX1 472 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 APH1BQ8WW43 257 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 CISD3P0C7P0 127 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 BMP4P12644 408 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 GRK5P34947 590 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 TOP3AQ13472 1001 aaPredicted RBP12.75□□□□□ -0.37
VPS54-203ENST00000409558 GPR19Q15760 415 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 TSTQ16762 297 aaKnown RBP12.75□□□□□ -0.37
VPS54-203ENST00000409558 DGUOKQ16854 277 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 PAQR6Q6TCH4 344 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 TRIM73Q86UV7 250 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 LACC1Q8IV20 430 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 ADGRF3Q8IZF5 1079 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 GGHQ92820 318 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 ZNF707Q96C28 371 aaPredicted RBP12.75□□□□□ -0.37
VPS54-203ENST00000409558 CENPOQ9BU64 300 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 NMNAT1Q9HAN9 279 aaPredicted RBP12.75□□□□□ -0.37
VPS54-203ENST00000409558 CD93Q9NPY3 652 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 TMCC3Q9ULS5 477 aa12.75□□□□□ -0.37
VPS54-203ENST00000409558 SLC35F4A4IF30 521 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 PSMD11O00231 422 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 SLC16A6O15403 523 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 NDUFS4O43181 175 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 GDI1P31150 447 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 EIF2B2P49770 351 aaKnown RBP12.74□□□□□ -0.37
VPS54-203ENST00000409558 NCBP2P52298 156 aaKnown RBP eCLIP12.74□□□□□ -0.37
VPS54-203ENST00000409558 GPM6BQ13491 265 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 PLPP6Q8IY26 295 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 ZNF614Q8N883 585 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 ZFP41Q8N8Y5 198 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 C14orf119Q9NWQ9 140 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 QSOX1O00391 747 aa12.74□□□□□ -0.37
VPS54-203ENST00000409558 ADAMDEC1O15204 470 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms