RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ABRAXAS2Q15018 415 aa6.57□□□□□ -1.36
SF3B1-201ENST00000335508 PTGES3Q15185 160 aaKnown RBP6.57□□□□□ -1.36
SF3B1-201ENST00000335508 NRF1Q16656 503 aa6.57□□□□□ -1.36
SF3B1-201ENST00000335508 TLDC1Q6P9B6 456 aa6.57□□□□□ -1.36
SF3B1-201ENST00000335508 ZCCHC7Q8N3Z6 543 aaKnown RBP6.57□□□□□ -1.36
SF3B1-201ENST00000335508 PKP4Q99569 1192 aa6.57□□□□□ -1.36
SF3B1-201ENST00000335508 SONP18583 2426 aaKnown RBP6.56□□□□□ -1.36
SF3B1-201ENST00000335508 PSIP1O75475 530 aaKnown RBP6.56□□□□□ -1.36
SF3B1-201ENST00000335508 MMP2P08253 660 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 CISD3P0C7P0 127 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 PRSS56P0CW18 603 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 ACPPP15309 386 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 IL1RNP18510 177 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 CDH12P55289 794 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 SCARB2Q14108 478 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 PHF19Q5T6S3 580 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 ADCK1Q86TW2 530 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 SCAIQ8N9R8 606 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 CADM4Q8NFZ8 388 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 OR52E1Q8NGJ3 308 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 ZDHHC1Q8WTX9 485 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 THRSPQ92748 146 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 FANCFQ9NPI8 374 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-201ENST00000335508 CCM2LQ9NUG4 571 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-201ENST00000335508 YBX2Q9Y2T7 364 aaKnown RBP6.56□□□□□ -1.36
SF3B1-201ENST00000335508 SDK2Q58EX2 2172 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 PCNX1Q96RV3 2341 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 LOXHD1Q8IVV2 1947 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 TLCD2A6NGC4 264 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 MED26O95402 600 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 TFPIP10646 304 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 IMPDH2P12268 514 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 CCNA2P20248 432 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 MSX2P35548 267 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-201ENST00000335508 IL18R1Q13478 541 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 LCN8Q6JVE9 175 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 C6orf120Q7Z4R8 191 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 SMRP1Q8NCR6 262 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 SUN3Q8TAQ9 357 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.56□□□□□ -1.363e-7■■□□□ 12
SF3B1-201ENST00000335508 BMFQ96LC9 184 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 HHIPQ96QV1 700 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 RIIAD1A6NNX1 92 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 LMO7DNF2Z398 122 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 B4GALT2O60909 372 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 ABCB7O75027 752 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 FAM20BO75063 409 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 CKMT2P17540 419 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 NDUFV2P19404 249 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 VSX2P58304 361 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-201ENST00000335508 ADGRE1Q14246 886 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 TRAM2Q15035 370 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 PDK3Q15120 406 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 YOD1Q5VVQ6 348 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-201ENST00000335508 TRIM73Q86UV7 250 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 METTL4Q8N3J2 472 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 OR1E3Q8WZA6 343 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 FCGR1BQ92637 280 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 RNFT2Q96EX2 444 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 SLC47A1Q96FL8 570 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 CHRDQ9H2X0 955 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 FGF21Q9NSA1 209 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 PDP1Q9P0J1 537 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-201ENST00000335508 NUP214P35658 2090 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-201ENST00000335508 POLEQ07864 2286 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 WDR90Q96KV7 1748 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 ARPC4-TTLL3A0A0A6YYG9 625 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 MBTPS2O43462 519 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 PPM1BO75688 479 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 C8BP07358 591 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 SOX6P35712 828 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 SGSHP51688 502 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 OC90Q02509 493 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-201ENST00000335508 UGT3A2Q3SY77 523 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 SLC2A7Q6PXP3 512 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 FAM129CQ86XR2 697 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 LGI4Q8N135 537 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 IL22RA1Q8N6P7 574 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 ACOT4Q8N9L9 421 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 OR10H5Q8NGA6 315 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 CNBD2Q96M20 576 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 SMIM14Q96QK8 99 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 INSM2Q96T92 566 aaPredicted RBP6.56□□□□□ -1.36
SF3B1-201ENST00000335508 GABRG3Q99928 467 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 WDR83Q9BRX9 315 aaKnown RBP6.56□□□□□ -1.36
SF3B1-201ENST00000335508 GRIP2Q9C0E4 1043 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 YIPF3Q9GZM5 350 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 IL21RQ9HBE5 538 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 GIMAP2Q9UG22 337 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 ANKHD1Q8IWZ3 2542 aaKnown RBP6.56□□□□□ -1.36
SF3B1-201ENST00000335508 G3V2T6 193 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 TLR4O00206 839 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 ANGPTL1O95841 491 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 IL12BP29460 328 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 BLVRAP53004 296 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 DCAF7P61962 342 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 GRB7Q14451 532 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 Q6ZSR9 355 aa6.56□□□□□ -1.36
SF3B1-201ENST00000335508 TTLL10Q6ZVT0 673 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms