RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 COMMD6Q7Z4G1 85 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 IFNL1Q8IU54 200 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 GPR65Q8IYL9 337 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 IQCF1Q8N6M8 205 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 GEMIN6Q8WXD5 167 aaKnown RBP11.84□□□□□ -0.51
NUP88-201ENST00000225696 CLP1Q92989 425 aaKnown RBP11.84□□□□□ -0.51
NUP88-201ENST00000225696 ECHDC3Q96DC8 303 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 ZFYVE19Q96K21 471 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 SPNS1Q9H2V7 528 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 SUV39H2Q9H5I1 410 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 FZD3Q9NPG1 666 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 GRIP1Q9Y3R0 1128 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 YIPF1Q9Y548 306 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 DNMT3AQ9Y6K1 912 aaPredicted RBP11.84□□□□□ -0.51
NUP88-201ENST00000225696 MAU2Q9Y6X3 613 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 ENPP4Q9Y6X5 453 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 DSPPQ9NZW4 1301 aa11.83□□□□□ -0.51
NUP88-201ENST00000225696 HMX3A6NHT5 357 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 HEPACAM2A8MVW5 462 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 ZNF670-ZNF695F2Z2N8 137 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 TLR4O00206 839 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 EIF3FO00303 357 aaPredicted RBP11.83□□□□□ -0.52
NUP88-201ENST00000225696 NPC1O15118 1278 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 TSPAN6O43657 245 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 UGDHO60701 494 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 TPST2O60704 377 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 PRKAR2AP13861 404 aaKnown RBP11.83□□□□□ -0.52
NUP88-201ENST00000225696 ITGA2P17301 1181 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 CHI3L1P36222 383 aaPredicted RBP11.83□□□□□ -0.52
NUP88-201ENST00000225696 RORCP51449 518 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 CAV3P56539 151 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 SP140Q13342 867 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 VEPH1Q14D04 833 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 CRB2Q5IJ48 1285 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 CEACAM20Q6UY09 585 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 Q6ZVL8 140 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 HSD11B1LQ7Z5J1 315 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 DNAJB7Q7Z6W7 309 aaPredicted RBP11.83□□□□□ -0.52
NUP88-201ENST00000225696 TMPRSS11BQ86T26 416 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.83□□□□□ -0.52
NUP88-201ENST00000225696 SYT14Q8NB59 555 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 FAM46DQ8NEK8 389 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 GOT1L1Q8NHS2 421 aaPredicted RBP11.83□□□□□ -0.52
NUP88-201ENST00000225696 SETD6Q8TBK2 473 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 SLC7A6Q92536 515 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 MAPKAP1Q9BPZ7 522 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 REEP4Q9H6H4 257 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 GPSM3Q9Y4H4 160 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 PLXND1Q9Y4D7 1925 aa11.83□□□□□ -0.52
NUP88-201ENST00000225696 FADS2P1A8MWK0 482 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 B4DXG7 233 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 ERVH48-1M5A8F1 160 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 SLC16A5O15375 505 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 PLA2G10O15496 165 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 SLCO2B1O94956 709 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 FURINP09958 794 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 CSTF2P33240 577 aaKnown RBP eCLIP11.82□□□□□ -0.52
NUP88-201ENST00000225696 SOAT1P35610 550 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 ETV3P41162 512 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 CYP4F8P98187 520 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 RHAGQ02094 409 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.82□□□□□ -0.52
NUP88-201ENST00000225696 C22orf42Q6IC83 251 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 FAM131AQ6UXB0 335 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 USP45Q70EL2 814 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 PHC2Q8IXK0 858 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 CADM2Q8N3J6 435 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 TCEANCQ8N8B7 351 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 TP53I13Q8NBR0 393 aaPredicted RBP11.82□□□□□ -0.52
NUP88-201ENST00000225696 OR4D11Q8NGI4 311 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 APOBEC4Q8WW27 367 aaKnown RBP11.82□□□□□ -0.52
NUP88-201ENST00000225696 C19orf43Q9BQ61 176 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 POLR2J2Q9GZM3 115 aaKnown RBP11.82□□□□□ -0.52
NUP88-201ENST00000225696 TMEM38AQ9H6F2 299 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 BRF2Q9HAW0 419 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 RC3H2Q9HBD1 1191 aaKnown RBP11.82□□□□□ -0.52
NUP88-201ENST00000225696 PLEKHB1Q9UF11 243 aaPredicted RBP11.82□□□□□ -0.52
NUP88-201ENST00000225696 ATP6V1HQ9UI12 483 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 CARD8Q9Y2G2 431 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 KIAA1671Q9BY89 1806 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 CKAP5Q14008 2032 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 A0A0G2JMP0 313 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 A0A1W2PQL4 384 aaPredicted RBP11.82□□□□□ -0.52
NUP88-201ENST00000225696 PSIP1O75475 530 aaKnown RBP11.82□□□□□ -0.52
NUP88-201ENST00000225696 GSTM1P09488 218 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 PSMA1P25786 263 aaKnown RBP11.82□□□□□ -0.52
NUP88-201ENST00000225696 KIR2DL3P43628 341 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 TAS2R50P59544 299 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 ZNF91Q05481 1191 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 ZNF763Q0D2J5 394 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 FCHO2Q0JRZ9 810 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 C2orf80Q0P641 193 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 HNRNPA0Q13151 305 aaKnown RBP11.82□□□□□ -0.52
NUP88-201ENST00000225696 FAM209AQ5JX71 171 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 PPP2R2DQ66LE6 453 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 SLCO4C1Q6ZQN7 724 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 CMTM8Q8IZV2 173 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 TAGAPQ8N103 731 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 ZNF740Q8NDX6 193 aa11.82□□□□□ -0.52
NUP88-201ENST00000225696 GPR32P1Q8NGA4 272 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms