RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 NACAP1Q9BZK3 213 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 SLC5A7Q9GZV3 580 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 C5orf66Q9H5L9 145 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 MID1IP1Q9NPA3 183 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 PNPLA3Q9NST1 481 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 PANK4Q9NVE7 773 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 TBC1D13Q9NVG8 400 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 SPG21Q9NZD8 308 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 PILRBQ9UKJ0 227 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 SNX5Q9Y5X3 404 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 MAP2P11137 1827 aaKnown RBP4.29□□□□□ -1.72
LIMA1-205ENST00000550592 NFAT5O94916 1531 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 LAMB4A4D0S4 1761 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 DLEC1Q9Y238 1755 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 CD163L1Q9NR16 1453 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 MUC6Q6W4X9 2439 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 ADGRB1O14514 1584 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 SMIM30A4D0T7 59 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 FAM149AA5PLN7 773 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 ANKDD1BA6NHY2 528 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 HHLA1C9JL84 531 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 E5RGE8 158 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 H0YIG0 161 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 AKAP3O75969 853 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 HMBSP08397 361 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 ITGB6P18564 788 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 RBMS1P29558 406 aaKnown RBP4.28□□□□□ -1.72
LIMA1-205ENST00000550592 CTNNB1P35222 781 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 SERPINB6P35237 376 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 MAGEB1P43366 347 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 LEPRP48357 1165 aaKnown RBP4.28□□□□□ -1.72
LIMA1-205ENST00000550592 ACTN3Q08043 901 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-205ENST00000550592 TEFQ10587 303 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 ABRQ12979 859 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 RPS6KA1Q15418 735 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 SGCBQ16585 318 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 ZNF876PQ49A33 203 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 AARDQ4LEZ3 155 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 ZNF542PQ5EBM4 170 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 FFAR4Q5NUL3 377 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 AGAP6Q5VW22 663 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 OR4C11Q6IEV9 310 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 PLBD1Q6P4A8 553 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 USP43Q70EL4 1123 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 BTN2A1Q7KYR7 527 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 COX8CQ7Z4L0 72 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 LACC1Q8IV20 430 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 KLHDC8BQ8IXV7 354 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 NAT8LQ8N9F0 302 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 GPRC5AQ8NFJ5 357 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 ZNRF4Q8WWF5 429 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 BCL2L2Q92843 193 aaPredicted RBP4.28□□□□□ -1.72
LIMA1-205ENST00000550592 AZIN2Q96A70 460 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 NXPE2Q96DL1 559 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 PANX3Q96QZ0 392 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 FUCA2Q9BTY2 467 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 RPF1Q9H9Y2 349 aaKnown RBP4.28□□□□□ -1.72
LIMA1-205ENST00000550592 RNPEPL1Q9HAU8 725 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 STAU2Q9NUL3 570 aaKnown RBP eCLIP4.28□□□□□ -1.72
LIMA1-205ENST00000550592 EXOC1Q9NV70 894 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 TRPC4Q9UBN4 977 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 EPHA6Q9UF33 1036 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 STX8Q9UNK0 236 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 ITM2BQ9Y287 266 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 NSG2Q9Y328 171 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 ITGB4P16144 1822 aa4.28□□□□□ -1.72
LIMA1-205ENST00000550592 SCN11AQ9UI33 1791 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 A0A087X0K7 114 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 A0A0A6YYC8 382 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-205ENST00000550592 TRBV4-1A0A0J9YWV2 114 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 TRIM64A6NGJ6 449 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 TRIM64BA6NI03 449 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 I3L1I5 382 aaPredicted RBP4.27□□□□□ -1.73
LIMA1-205ENST00000550592 GOT1P17174 413 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 RPL35AP18077 110 aaKnown RBP4.27□□□□□ -1.73
LIMA1-205ENST00000550592 OR3A2P47893 321 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 NME5P56597 212 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 CSNK2BP67870 215 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 RPP38P78345 283 aaKnown RBP4.27□□□□□ -1.73
LIMA1-205ENST00000550592 SP3Q02447 781 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 SLC34A1Q06495 639 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 PPP2R5CQ13362 524 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 TRA2AQ13595 282 aaKnown RBP eCLIP4.27□□□□□ -1.73
LIMA1-205ENST00000550592 PPA1Q15181 289 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 ARMCX4Q5H9R4 360 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 DHRS11Q6UWP2 260 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 C5orf24Q7Z6I8 188 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 TDHQ8IZJ6 230 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 ARHGAP45Q92619 1136 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 AP2M1Q96CW1 435 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 FBXO17Q96EF6 278 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 GUCD1Q96NT3 240 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 NECTIN4Q96NY8 510 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 ZNF559Q9BR84 538 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 FSD1Q9BTV5 496 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 ACPTQ9BZG2 426 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 P2RY12Q9H244 342 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 CUEDC2Q9H467 287 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 MIS18AQ9NYP9 233 aa4.27□□□□□ -1.73
LIMA1-205ENST00000550592 RANBP2P49792 3224 aaKnown RBP4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms