RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 ZNF433Q8N7K0 673 aaPredicted RBP14.38□□□□□ -0.11
CUX1-214ENST00000550008 C16orf78Q8WTQ4 265 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 WDR12Q9GZL7 423 aaKnown RBP14.38□□□□□ -0.11
CUX1-214ENST00000550008 ZBP1Q9H171 429 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 IL21RQ9HBE5 538 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 ACSL5Q9ULC5 683 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 CA5BQ9Y2D0 317 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 RBMX2Q9Y388 322 aaKnown RBP14.38□□□□□ -0.11
CUX1-214ENST00000550008 VEGFDO43915 354 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 PRMT3O60678 531 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 CKMT1AP12532 417 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 SIM1P81133 766 aaPredicted RBP14.37□□□□□ -0.11
CUX1-214ENST00000550008 KRT74Q7RTS7 529 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 IZUMO1Q8IYV9 350 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 ZNF784Q8NCA9 323 aaPredicted RBP14.37□□□□□ -0.11
CUX1-214ENST00000550008 SLC22A18Q96BI1 424 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 OR2M4Q96R27 311 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 NTMT1Q9BV86 223 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 SLC17A9Q9BYT1 436 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 TTTY10Q9BZA0 68 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 SPRTNQ9H040 489 aaPredicted RBP14.37□□□□□ -0.11
CUX1-214ENST00000550008 ANKHQ9HCJ1 492 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 ARMC1Q9NVT9 282 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 HCN4Q9Y3Q4 1203 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 GABRR3A8MPY1 467 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 SLC25A12O75746 678 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 PCSK2P16519 638 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 SUZ12Q15022 739 aaKnown RBP14.37□□□□□ -0.11
CUX1-214ENST00000550008 AFMIDQ63HM1 303 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 TMEM107Q6UX40 140 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 GALNT7Q86SF2 657 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 MEX3DQ86XN8 651 aaKnown RBP14.37□□□□□ -0.11
CUX1-214ENST00000550008 DTD2Q96FN9 168 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 CPEB1Q9BZB8 566 aaKnown RBP14.37□□□□□ -0.11
CUX1-214ENST00000550008 UCK2Q9BZX2 261 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 PRDM8Q9NQV8 689 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 HEBP1Q9NRV9 189 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 IKZF2Q9UKS7 526 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 HEBP2Q9Y5Z4 205 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 FAM170BA6NMN3 283 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 IGLV3-27P01718 113 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 AK4P27144 223 aaPredicted RBP14.37□□□□□ -0.11
CUX1-214ENST00000550008 TUBA4AP68366 448 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 PMS2P3Q13401 168 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 TSTQ16762 297 aaKnown RBP14.37□□□□□ -0.11
CUX1-214ENST00000550008 FAM78AQ5JUQ0 283 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 TMEM236Q5W0B7 351 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 ISG20Q96AZ6 181 aaKnown RBP14.37□□□□□ -0.11
CUX1-214ENST00000550008 WDR45Q9Y484 360 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 FAM186AA6NE01 2351 aa14.37□□□□□ -0.11
CUX1-214ENST00000550008 ACOT8O14734 319 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 IL1RNP18510 177 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 PXNP49023 591 aaPredicted RBP14.36□□□□□ -0.11
CUX1-214ENST00000550008 C5orf22Q49AR2 442 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 CEP78Q5JTW2 689 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 FAAH2Q6GMR7 532 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 NEK10Q6ZWH5 1172 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 ZNF696Q9H7X3 374 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 OR6C74A6NCV1 312 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 RPLP0P05388 317 aaKnown RBP14.36□□□□□ -0.11
CUX1-214ENST00000550008 EIF2B5Q13144 721 aaKnown RBP14.36□□□□□ -0.11
CUX1-214ENST00000550008 MAELQ96JY0 434 aaKnown RBP14.36□□□□□ -0.11
CUX1-214ENST00000550008 AGPAT4Q9NRZ5 378 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 CALML5Q9NZT1 146 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 IL20RAQ9UHF4 553 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 TAPBPO15533 448 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 VSX2P58304 361 aaPredicted RBP14.36□□□□□ -0.11
CUX1-214ENST00000550008 ST3GAL4Q11206 333 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 SLC36A3Q495N2 470 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 GRHL2Q6ISB3 625 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 RANBP3LQ86VV4 465 aaPredicted RBP14.36□□□□□ -0.11
CUX1-214ENST00000550008 PELI3Q8N2H9 469 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 OR9Q2Q8NGE9 314 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 OR6K6Q8NGW6 343 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 CAPSLQ8WWF8 208 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 RAB7BQ96AH8 199 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 COMMD3Q9UBI1 195 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 KLHL33A6NCF5 533 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 CACNG3O60359 315 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 CDKN2CP42773 168 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 NPRL3Q12980 569 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 DEFB110Q30KQ9 67 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 SLC5A8Q8N695 610 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 MRPL48Q96GC5 212 aaKnown RBP14.36□□□□□ -0.11
CUX1-214ENST00000550008 DEPDC7Q96QD5 511 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 TPSD1Q9BZJ3 242 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 MS4A12Q9NXJ0 267 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 MKLN1Q9UL63 735 aa14.36□□□□□ -0.11
CUX1-214ENST00000550008 TCRBV21S2A2A0A5A6 115 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 ANHXE9PGG2 379 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 H3BSH0 61 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 FRS3O43559 492 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 STX11O75558 287 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 ADH1BP00325 375 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 IL12RB1P42701 662 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 RUNDC3AQ59EK9 446 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 WDR53Q7Z5U6 358 aaPredicted RBP14.35□□□□□ -0.11
CUX1-214ENST00000550008 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.35□□□□□ -0.111e-9■□□□□ 9.1
CUX1-214ENST00000550008 PREBQ9HCU5 417 aa14.35□□□□□ -0.11
CUX1-214ENST00000550008 CUEDC1Q9NWM3 386 aaPredicted RBP14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms