RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 RAE1P78406 368 aaKnown RBP16.17■□□□□ 0.18
LIG1-204ENST00000542460 CLN3Q13286 438 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 DNASE1L3Q13609 305 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 RFTN2Q52LD8 501 aaPredicted RBP16.17■□□□□ 0.18
LIG1-204ENST00000542460 VWA2Q5GFL6 755 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 C6orf136Q5SQH8 315 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 MRM1Q6IN84 353 aaKnown RBP16.17■□□□□ 0.18
LIG1-204ENST00000542460 GPR180Q86V85 440 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 ENDOVQ8N8Q3 282 aaKnown RBP16.17■□□□□ 0.18
LIG1-204ENST00000542460 STT3BQ8TCJ2 826 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 ADAMTS18Q8TE60 1221 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 MIEF2Q96C03 454 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 PEX11GQ96HA9 241 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 MAPKAP1Q9BPZ7 522 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 EFHD1Q9BUP0 239 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 DPH1Q9BZG8 443 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 C14orf105Q9NVL8 296 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 KCMF1Q9P0J7 381 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 PHF11Q9UIL8 331 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 FBXW2Q9UKT8 454 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 PADI2Q9Y2J8 665 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 SPACA6W5XKT8 324 aa16.17■□□□□ 0.18
LIG1-204ENST00000542460 GNG14A0A1W2PPG7 69 aa16.16■□□□□ 0.18
LIG1-204ENST00000542460 TMPRSS11DO60235 418 aa16.16■□□□□ 0.18
LIG1-204ENST00000542460 PCDH7O60245 1069 aa16.16■□□□□ 0.18
LIG1-204ENST00000542460 BMP10O95393 424 aa16.16■□□□□ 0.18
LIG1-204ENST00000542460 ANXA4P09525 319 aaPredicted RBP16.16■□□□□ 0.18
LIG1-204ENST00000542460 ZGLP1P0C6A0 271 aa16.16■□□□□ 0.18
LIG1-204ENST00000542460 TIA1P31483 386 aaKnown RBP eCLIP16.16■□□□□ 0.18
LIG1-204ENST00000542460 RPL38P63173 70 aaKnown RBP16.16■□□□□ 0.18
LIG1-204ENST00000542460 SMU1Q2TAY7 513 aa16.16■□□□□ 0.18
LIG1-204ENST00000542460 NOXRED1Q6NXP6 359 aa16.16■□□□□ 0.18
LIG1-204ENST00000542460 MED25Q71SY5 747 aa16.16■□□□□ 0.18
LIG1-204ENST00000542460 LRRC34Q8IZ02 419 aa16.16■□□□□ 0.18
LIG1-204ENST00000542460 TBC1D20Q96BZ9 403 aa16.16■□□□□ 0.18
LIG1-204ENST00000542460 NAF1Q96HR8 494 aaKnown RBP16.16■□□□□ 0.18
LIG1-204ENST00000542460 AKTIPQ9H8T0 292 aa16.16■□□□□ 0.18
LIG1-204ENST00000542460 GPN2Q9H9Y4 310 aaPredicted RBP16.16■□□□□ 0.18
LIG1-204ENST00000542460 ASB4Q9Y574 426 aa16.16■□□□□ 0.18
LIG1-204ENST00000542460 PCDHGA6Q9Y5G7 932 aa16.16■□□□□ 0.18
LIG1-204ENST00000542460 SDHDO14521 159 aa16.15■□□□□ 0.18
LIG1-204ENST00000542460 CNOT3O75175 753 aaKnown RBP16.15■□□□□ 0.18
LIG1-204ENST00000542460 GUCY1B2O75343 617 aa16.15■□□□□ 0.18
LIG1-204ENST00000542460 KLF7O75840 302 aaPredicted RBP16.15■□□□□ 0.18
LIG1-204ENST00000542460 FHP07954 510 aa16.15■□□□□ 0.18
LIG1-204ENST00000542460 ALOX15P16050 662 aaPredicted RBP16.15■□□□□ 0.18
LIG1-204ENST00000542460 JAK1P23458 1154 aa16.15■□□□□ 0.18
LIG1-204ENST00000542460 PTPN4P29074 926 aa16.15■□□□□ 0.18
LIG1-204ENST00000542460 TRA2BP62995 288 aaKnown RBP16.15■□□□□ 0.18
LIG1-204ENST00000542460 MAD2L1Q13257 205 aaPredicted RBP16.15■□□□□ 0.18
LIG1-204ENST00000542460 VWA5B1Q5TIE3 1220 aa16.15■□□□□ 0.18
LIG1-204ENST00000542460 EPGNQ6UW88 154 aa16.15■□□□□ 0.18
LIG1-204ENST00000542460 MAVSQ7Z434 540 aa16.15■□□□□ 0.18
LIG1-204ENST00000542460 ZC3H7AQ8IWR0 971 aaKnown RBP16.15■□□□□ 0.18
LIG1-204ENST00000542460 SHISA5Q8N114 240 aa16.15■□□□□ 0.18
LIG1-204ENST00000542460 EFCAB3Q8N7B9 438 aa16.15■□□□□ 0.18
LIG1-204ENST00000542460 FNDC5Q8NAU1 212 aa16.15■□□□□ 0.18
LIG1-204ENST00000542460 ZNF317Q96PQ6 595 aaPredicted RBP16.15■□□□□ 0.18
LIG1-204ENST00000542460 FGFR1OP2Q9NVK5 253 aa16.15■□□□□ 0.18
LIG1-204ENST00000542460 WDR70Q9NW82 654 aa16.15■□□□□ 0.18
LIG1-204ENST00000542460 GIMAP2Q9UG22 337 aa16.15■□□□□ 0.18
LIG1-204ENST00000542460 TCFL5Q9UL49 500 aa16.15■□□□□ 0.18
LIG1-204ENST00000542460 ZMIZ1Q9ULJ6 1067 aa16.15■□□□□ 0.18
LIG1-204ENST00000542460 MRPS33Q9Y291 106 aaKnown RBP16.15■□□□□ 0.18
LIG1-204ENST00000542460 ATG4BQ9Y4P1 393 aa16.15■□□□□ 0.18
LIG1-204ENST00000542460 POLR3HQ9Y535 204 aaPredicted RBP16.15■□□□□ 0.18
LIG1-204ENST00000542460 TMEM8BA6NDV4 472 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 CYR61O00622 381 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 PROM1O43490 865 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 PRR35P0CG20 571 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 ACPPP15309 386 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 CPN2P22792 545 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 F8A1P23610 371 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 MAPK1P28482 360 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 EPHA3P29320 983 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 TLX1P31314 330 aaPredicted RBP16.14■□□□□ 0.18
LIG1-204ENST00000542460 EIF2S3P41091 472 aaKnown RBP16.14■□□□□ 0.18
LIG1-204ENST00000542460 BUD31P41223 144 aaPredicted RBP16.14■□□□□ 0.18
LIG1-204ENST00000542460 GSTM5P46439 218 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 HNRNPH2P55795 449 aaKnown RBP16.14■□□□□ 0.18
LIG1-204ENST00000542460 EMX2Q04743 252 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 KLC1Q07866 573 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 ERV3-1Q14264 604 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 TUBB8Q3ZCM7 444 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 LARP4Q71RC2 724 aaKnown RBP eCLIP16.14■□□□□ 0.18
LIG1-204ENST00000542460 PARP9Q8IXQ6 854 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 KDF1Q8NAX2 398 aaPredicted RBP16.14■□□□□ 0.18
LIG1-204ENST00000542460 OR2Y1Q8NGV0 311 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 TM4SF18Q96CE8 201 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 MAELQ96JY0 434 aaKnown RBP16.14■□□□□ 0.18
LIG1-204ENST00000542460 FCRL1Q96LA6 429 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 SPSB2Q99619 263 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 SIKE1Q9BRV8 207 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 EBPLQ9BY08 206 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 TRIM55Q9BYV6 548 aa16.14■□□□□ 0.18
LIG1-204ENST00000542460 WDR55Q9H6Y2 383 aaPredicted RBP16.14■□□□□ 0.18
LIG1-204ENST00000542460 WBP11Q9Y2W2 641 aaKnown RBP16.14■□□□□ 0.18
LIG1-204ENST00000542460 PTRH2Q9Y3E5 179 aaKnown RBP16.14■□□□□ 0.18
LIG1-204ENST00000542460 SEC16AO15027 2179 aa16.14■□□□□ 0.17
LIG1-204ENST00000542460 IGF2RP11717 2491 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms