RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 DYRK3O43781 588 aa13.77□□□□□ -0.21
CPSF7-201ENST00000340437 LRG1P02750 347 aa13.77□□□□□ -0.21
CPSF7-201ENST00000340437 IFNW1P05000 195 aa13.77□□□□□ -0.21
CPSF7-201ENST00000340437 ALPPL2P10696 532 aa13.77□□□□□ -0.21
CPSF7-201ENST00000340437 PCGF2P35227 344 aa13.77□□□□□ -0.21
CPSF7-201ENST00000340437 RUNX1T1Q06455 604 aa13.77□□□□□ -0.21
CPSF7-201ENST00000340437 PLEKHS1Q5SXH7 462 aa13.77□□□□□ -0.21
CPSF7-201ENST00000340437 YME1L1Q96TA2 773 aa13.77□□□□□ -0.21
CPSF7-201ENST00000340437 TRPC4Q9UBN4 977 aa13.77□□□□□ -0.21
CPSF7-201ENST00000340437 SEMG1P04279 462 aa13.77□□□□□ -0.21
CPSF7-201ENST00000340437 RPS19P39019 145 aaKnown RBP13.77□□□□□ -0.21
CPSF7-201ENST00000340437 GRIN2CQ14957 1233 aa13.77□□□□□ -0.21
CPSF7-201ENST00000340437 WDR53Q7Z5U6 358 aaPredicted RBP13.77□□□□□ -0.21
CPSF7-201ENST00000340437 LAX1Q8IWV1 398 aa13.77□□□□□ -0.21
CPSF7-201ENST00000340437 EXOSC8Q96B26 276 aaKnown RBP13.77□□□□□ -0.21
CPSF7-201ENST00000340437 OR2AG1Q9H205 316 aa13.77□□□□□ -0.21
CPSF7-201ENST00000340437 SP140LQ9H930 580 aa13.77□□□□□ -0.21
CPSF7-201ENST00000340437 ACER3Q9NUN7 267 aa13.77□□□□□ -0.21
CPSF7-201ENST00000340437 SPATA6Q9NWH7 488 aaPredicted RBP13.77□□□□□ -0.21
CPSF7-201ENST00000340437 MUTYHQ9UIF7 546 aa13.77□□□□□ -0.21
CPSF7-201ENST00000340437 ZNF221Q9UK13 617 aa13.77□□□□□ -0.21
CPSF7-201ENST00000340437 C1orf226A1L170 272 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 TMEM229AB2RXF0 380 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 CCRL2O00421 344 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 HOXA2O43364 376 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 CSNK2BP67870 215 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 ZNF45Q02386 682 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 TMEM115Q12893 351 aaPredicted RBP13.76□□□□□ -0.21
CPSF7-201ENST00000340437 CASP12Q6UXS9 341 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 ADCK2Q7Z695 626 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.76□□□□□ -0.21
CPSF7-201ENST00000340437 ZFP41Q8N8Y5 198 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 PIP5K1AQ99755 562 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 EXO1Q9UQ84 846 aaKnown RBP13.76□□□□□ -0.21
CPSF7-201ENST00000340437 TEX28O15482 410 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 GREM1O60565 184 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 CLEC2LP0C7M8 214 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 CRISP1P54107 249 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 CAV3P56539 151 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 ZNF763Q0D2J5 394 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 CNTN1Q12860 1018 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 TARDBPQ13148 414 aaKnown RBP eCLIP13.76□□□□□ -0.21
CPSF7-201ENST00000340437 C1QTNF12Q5T7M4 302 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 FAM131AQ6UXB0 335 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 SHFQ7M4L6 423 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 C7orf57Q8NEG2 295 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 FIBINQ8TAL6 211 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 ZNF480Q8WV37 535 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 XAGE5Q8WWM1 108 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 GABARAPL3Q9BY60 117 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 CARD8Q9Y2G2 431 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 PADI2Q9Y2J8 665 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 ISPDA4D126 451 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 TLR4O00206 839 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 TLX2O43763 284 aaPredicted RBP13.76□□□□□ -0.21
CPSF7-201ENST00000340437 ATG13O75143 517 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 ABLIM3O94929 683 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 CDRT1O95170 752 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 GSTM1P09488 218 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 MPC1LP0DKB6 136 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 ITGA2P17301 1181 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 PPIBP23284 216 aaKnown RBP13.76□□□□□ -0.21
CPSF7-201ENST00000340437 MANFP55145 182 aaKnown RBP13.76□□□□□ -0.21
CPSF7-201ENST00000340437 POLR2LP62875 67 aaKnown RBP13.76□□□□□ -0.21
CPSF7-201ENST00000340437 PRSS53Q2L4Q9 553 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 TYW3Q6IPR3 259 aaKnown RBP13.76□□□□□ -0.21
CPSF7-201ENST00000340437 GRHL2Q6ISB3 625 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 EMILIN2Q9BXX0 1053 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 HOXD1Q9GZZ0 328 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 RETREG1Q9H6L5 497 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 CERS4Q9HA82 394 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 KLHL3Q9UH77 587 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 CORO2BQ9UQ03 480 aa13.76□□□□□ -0.21
CPSF7-201ENST00000340437 WASHC1A8K0Z3 465 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 ELFN1P0C7U0 828 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 HIST2H2AA3Q6FI13 130 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 FRMPD2BQ6IN97 320 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 TMIGD1Q6UXZ0 262 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 WASH2PQ6VEQ5 465 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 TMPRSS11AQ6ZMR5 421 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 DTX3Q8N9I9 347 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 C16orf78Q8WTQ4 265 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 ING5Q8WYH8 240 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 NLNQ9BYT8 704 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 ELAC1Q9H777 363 aaKnown RBP13.75□□□□□ -0.21
CPSF7-201ENST00000340437 UGT2A1Q9Y4X1 527 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 PRMT3O60678 531 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 NME6O75414 186 aaPredicted RBP13.75□□□□□ -0.21
CPSF7-201ENST00000340437 HOXB6P17509 224 aaKnown RBP13.75□□□□□ -0.21
CPSF7-201ENST00000340437 LRRC26Q2I0M4 334 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 TMEM175Q9BSA9 504 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 SLC6A16Q9GZN6 736 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 ANGPT4Q9Y264 503 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 TMCC2O75069 709 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 ARHGEF15O94989 841 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 CST5P28325 142 aaPredicted RBP13.75□□□□□ -0.21
CPSF7-201ENST00000340437 HOXD10P28358 340 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 BMPR1AP36894 532 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 OLR1P78380 273 aa13.75□□□□□ -0.21
CPSF7-201ENST00000340437 LSM11P83369 360 aaKnown RBP eCLIP13.75□□□□□ -0.218e-7■□□□□ 10.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms