RNA–Protein interactions for RNA: ENST00000299543.8

CTDP1-202, Transcript of CTD phosphatase subunit 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CTDP1, Length 3,380 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-202ENST00000299543 NOGQ13253 232 aa12.88□□□□□ -0.35
CTDP1-202ENST00000299543 PPIGQ13427 754 aaKnown RBP eCLIP12.88□□□□□ -0.358e-6■■■□□ 17.7
CTDP1-202ENST00000299543 COL9A2Q14055 689 aaPredicted RBP12.88□□□□□ -0.35
CTDP1-202ENST00000299543 EXOC3L2Q2M3D2 409 aa12.88□□□□□ -0.35
CTDP1-202ENST00000299543 NRARPQ7Z6K4 114 aa12.88□□□□□ -0.35
CTDP1-202ENST00000299543 RNF130Q86XS8 419 aa12.88□□□□□ -0.35
CTDP1-202ENST00000299543 TAGAPQ8N103 731 aa12.88□□□□□ -0.35
CTDP1-202ENST00000299543 MMP21Q8N119 569 aa12.88□□□□□ -0.35
CTDP1-202ENST00000299543 WDR20Q8TBZ3 569 aa12.88□□□□□ -0.35
CTDP1-202ENST00000299543 ECHDC3Q96DC8 303 aa12.88□□□□□ -0.35
CTDP1-202ENST00000299543 DOHHQ9BU89 302 aa12.88□□□□□ -0.35
CTDP1-202ENST00000299543 ZNF556Q9HAH1 456 aa12.88□□□□□ -0.35
CTDP1-202ENST00000299543 EXOSC4Q9NPD3 245 aaKnown RBP12.88□□□□□ -0.35
CTDP1-202ENST00000299543 PLAGL1Q9UM63 463 aa12.88□□□□□ -0.35
CTDP1-202ENST00000299543 CCDC88CQ9P219 2028 aa12.88□□□□□ -0.35
CTDP1-202ENST00000299543 PLK4O00444 970 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 CYP2A6P11509 494 aaPredicted RBP12.87□□□□□ -0.35
CTDP1-202ENST00000299543 IDSP22304 550 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 IMPA1P29218 277 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 CCR2P41597 374 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 CTSKP43235 329 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 TAS2R50P59544 299 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 ZNF267Q14586 743 aaPredicted RBP12.87□□□□□ -0.35
CTDP1-202ENST00000299543 MED22Q15528 200 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 PROX2Q3B8N5 592 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 SYT6Q5T7P8 510 aaPredicted RBP12.87□□□□□ -0.35
CTDP1-202ENST00000299543 METTL3Q86U44 580 aaKnown RBP12.87□□□□□ -0.35
CTDP1-202ENST00000299543 OR8J2Q8NGG1 315 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 WDR48Q8TAF3 677 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 YIPF6Q96EC8 236 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 ZNF300Q96RE9 604 aaPredicted RBP12.87□□□□□ -0.35
CTDP1-202ENST00000299543 MCCC1Q96RQ3 725 aaPredicted RBP12.87□□□□□ -0.35
CTDP1-202ENST00000299543 RNF208Q9H0X6 261 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 MMP28Q9H239 520 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 SP140LQ9H930 580 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 CCNB1IP1Q9NPC3 277 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 NECTIN3Q9NQS3 549 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 EHD3Q9NZN3 535 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 NUFIP1Q9UHK0 495 aaKnown RBP12.87□□□□□ -0.35
CTDP1-202ENST00000299543 SLC6A14Q9UN76 642 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 HS3ST2Q9Y278 367 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 FAM227AF5H4B4 570 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 GFRA2O00451 464 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 ARHGEF9O43307 516 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 ATG13O75143 517 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 ARHGEF15O94989 841 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 HOXB9P17482 250 aaPredicted RBP12.87□□□□□ -0.35
CTDP1-202ENST00000299543 SLC19A1P41440 591 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 ITGA1P56199 1179 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 FCHO2Q0JRZ9 810 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 CSTF3Q12996 717 aaKnown RBP12.87□□□□□ -0.35
CTDP1-202ENST00000299543 SCARB2Q14108 478 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 MED27Q6P2C8 311 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 PRSS48Q7RTY5 328 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 CHAC2Q8WUX2 184 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 IL17FQ96PD4 163 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 MKRN2Q9H000 416 aaKnown RBP12.87□□□□□ -0.35
CTDP1-202ENST00000299543 OR2AG1Q9H205 316 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 ZDHHC4Q9NPG8 344 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 NDUFAF4Q9P032 175 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 SH2B3Q9UQQ2 575 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 KLHL20Q9Y2M5 609 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 OR6C70A6NIJ9 312 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 CSF2P04141 144 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 HNF4AP41235 474 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 CRYBA2P53672 197 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 CRISP3P54108 245 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 RAE1P78406 368 aaKnown RBP12.87□□□□□ -0.35
CTDP1-202ENST00000299543 PUS10Q3MIT2 529 aaKnown RBP12.87□□□□□ -0.35
CTDP1-202ENST00000299543 CDKL4Q5MAI5 379 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 AMIGO1Q86WK6 493 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 CACTIN-AS1Q8N1I8 211 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 SYNPOQ8N3V7 929 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 FAM109AQ8N4B1 249 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 PARP16Q8N5Y8 322 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 PPCDCQ96CD2 204 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 C7orf34Q96L11 122 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 CAPNS2Q96L46 248 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 IL4I1Q96RQ9 567 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 NRTNQ99748 197 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 ITPAQ9BY32 194 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 OR51E2Q9H255 320 aa12.87□□□□□ -0.35
CTDP1-202ENST00000299543 IGLV3-16A0A075B6K0 115 aa12.86□□□□□ -0.35
CTDP1-202ENST00000299543 ATP6V1G2-DDX39BF2Z307 99 aa12.86□□□□□ -0.35
CTDP1-202ENST00000299543 PCDH17O14917 1159 aa12.86□□□□□ -0.35
CTDP1-202ENST00000299543 POLR1CO15160 346 aaPredicted RBP12.86□□□□□ -0.35
CTDP1-202ENST00000299543 JUNDP17535 347 aa12.86□□□□□ -0.35
CTDP1-202ENST00000299543 IL1RNP18510 177 aa12.86□□□□□ -0.35
CTDP1-202ENST00000299543 POU3F3P20264 500 aaPredicted RBP12.86□□□□□ -0.35
CTDP1-202ENST00000299543 VIPR1P32241 457 aa12.86□□□□□ -0.35
CTDP1-202ENST00000299543 IL12RB1P42701 662 aa12.86□□□□□ -0.35
CTDP1-202ENST00000299543 ASMTP46597 345 aa12.86□□□□□ -0.35
CTDP1-202ENST00000299543 PTPN5P54829 565 aa12.86□□□□□ -0.35
CTDP1-202ENST00000299543 SP140Q13342 867 aa12.86□□□□□ -0.35
CTDP1-202ENST00000299543 TEAD2Q15562 447 aa12.86□□□□□ -0.35
CTDP1-202ENST00000299543 NLRP8Q86W28 1048 aa12.86□□□□□ -0.35
CTDP1-202ENST00000299543 KREMEN2Q8NCW0 462 aa12.86□□□□□ -0.35
CTDP1-202ENST00000299543 C7orf57Q8NEG2 295 aa12.86□□□□□ -0.35
CTDP1-202ENST00000299543 APH1BQ8WW43 257 aa12.86□□□□□ -0.35
CTDP1-202ENST00000299543 ING5Q8WYH8 240 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms