RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CAMK1GQ96NX5 476 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 AMBRA1Q9C0C7 1298 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 ATAD3AQ9NVI7 634 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 DNAAF2Q9NVR5 837 aaKnown RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 TMEFF2Q9UIK5 374 aaPredicted RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 GPR34Q9UPC5 381 aa14.18□□□□□ -0.14
USP4-203ENST00000415188 MAGED1Q9Y5V3 778 aaPredicted RBP14.18□□□□□ -0.14
USP4-203ENST00000415188 PCM1Q15154 2024 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 PCNX2A6NKB5 2137 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 C1orf226A1L170 272 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 BCAT2O15382 392 aaPredicted RBP14.17□□□□□ -0.14
USP4-203ENST00000415188 CPSF4O95639 269 aaKnown RBP14.17□□□□□ -0.14
USP4-203ENST00000415188 ZNF682O95780 498 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 SOD1P00441 154 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 C1GALT1C1LP0DN25 315 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 LAMP1P11279 417 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 CDK4P11802 303 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 EEF1B2P24534 225 aaKnown RBP14.17□□□□□ -0.14
USP4-203ENST00000415188 ELK4P28324 431 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 IST1P53990 364 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 ITGA1P56199 1179 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 TBPL1P62380 186 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 SIM1P81133 766 aaPredicted RBP14.17□□□□□ -0.14
USP4-203ENST00000415188 BNC1Q01954 994 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 ZNF763Q0D2J5 394 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 RPA4Q13156 261 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 KEAP1Q14145 624 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 ELAVL3Q14576 367 aaKnown RBP14.17□□□□□ -0.14
USP4-203ENST00000415188 LRRC23Q53EV4 343 aaPredicted RBP14.17□□□□□ -0.14
USP4-203ENST00000415188 CROCCP3Q8IVE0 287 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 C1orf216Q8TAB5 229 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 ZNF480Q8WV37 535 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 ARRDC3Q96B67 414 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 MTERF3Q96E29 417 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 WRAP53Q9BUR4 548 aaKnown RBP14.17□□□□□ -0.14
USP4-203ENST00000415188 CHST8Q9H2A9 424 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 TPT1P8Q9HAU6 139 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 IL21RQ9HBE5 538 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 TRIM39Q9HCM9 518 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 FAM8A1Q9UBU6 413 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 NAALAD2Q9Y3Q0 740 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 USP24Q9UPU5 2620 aa14.17□□□□□ -0.14
USP4-203ENST00000415188 KRT87PA6NCN2 255 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 H3BMQ9 156 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 BCKDKO14874 412 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 SH3BP5O60239 455 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 PCDH7O60245 1069 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 NOBOXO60393 691 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 MRPS14O60783 128 aaKnown RBP14.16□□□□□ -0.14
USP4-203ENST00000415188 B3GALT4O96024 378 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 DNTTP04053 509 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 IDSP22304 550 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 IGFBP5P24593 272 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 PBLDP30039 288 aaPredicted RBP14.16□□□□□ -0.14
USP4-203ENST00000415188 PIK3CBP42338 1070 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 GPR1P46091 355 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 HPCAP84074 193 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 CD47Q08722 323 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 SLC14A1Q13336 389 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 SPIDRQ14159 915 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 CCSMST1Q4G0I0 132 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 C9orf64Q5T6V5 341 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 ZNF776Q68DI1 518 aaPredicted RBP14.16□□□□□ -0.14
USP4-203ENST00000415188 TMEM179BQ7Z7N9 219 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 DSG4Q86SJ6 1040 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 TMPRSS11BQ86T26 416 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 HORMAD1Q86X24 394 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 SYTL1Q8IYJ3 562 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 RNF175Q8N4F7 328 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 LILRA3Q8N6C8 439 aaPredicted RBP14.16□□□□□ -0.14
USP4-203ENST00000415188 PIK3C3Q8NEB9 887 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 ZFP90Q8TF47 636 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 NEIL2Q969S2 332 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 RAB7BQ96AH8 199 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 SH3KBP1Q96B97 665 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 COG8Q96MW5 612 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 SCNM1Q9BWG6 230 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 RSPH9Q9H1X1 276 aaPredicted RBP14.16□□□□□ -0.14
USP4-203ENST00000415188 TRIT1Q9H3H1 467 aaKnown RBP14.16□□□□□ -0.14
USP4-203ENST00000415188 RAD21L1Q9H4I0 556 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 REEP4Q9H6H4 257 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 FBRSQ9HAH7 460 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 DMRT3Q9NQL9 472 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 ADPRHL2Q9NX46 363 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 CIDEBQ9UHD4 219 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 UTS2RQ9UKP6 389 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 ITM2BQ9Y287 266 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 PCDHGA8Q9Y5G5 932 aa14.16□□□□□ -0.14
USP4-203ENST00000415188 A0A1B0GVT2 93 aa14.15□□□□□ -0.14
USP4-203ENST00000415188 GABRR3A8MPY1 467 aa14.15□□□□□ -0.14
USP4-203ENST00000415188 C1QTNF9BB2RNN3 333 aa14.15□□□□□ -0.14
USP4-203ENST00000415188 M0QX08 132 aa14.15□□□□□ -0.14
USP4-203ENST00000415188 HYAL3O43820 417 aaPredicted RBP14.15□□□□□ -0.14
USP4-203ENST00000415188 LZTS3O60299 673 aaPredicted RBP14.15□□□□□ -0.14
USP4-203ENST00000415188 FKBP9O95302 570 aa14.15□□□□□ -0.14
USP4-203ENST00000415188 SEMA4FO95754 770 aa14.15□□□□□ -0.14
USP4-203ENST00000415188 C1QTNF9P0C862 333 aa14.15□□□□□ -0.14
USP4-203ENST00000415188 C6P13671 934 aa14.15□□□□□ -0.14
USP4-203ENST00000415188 ADRB3P13945 408 aa14.15□□□□□ -0.14
USP4-203ENST00000415188 PDHA2P29803 388 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms