RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 CTNNB1P35222 781 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 RPL34P49207 117 aaKnown RBP11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 FBXO43Q4G163 708 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 XKR4Q5GH76 650 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 ARL9Q6T311 187 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 FAM46DQ8NEK8 389 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 B3GNT7Q8NFL0 401 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 RHOXF1Q8NHV9 184 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 ZCCHC10Q8TBK6 192 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 GATAD2BQ8WXI9 593 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 MUL1Q969V5 352 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 SLC35G5Q96KT7 338 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 MED28Q9H204 178 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 CXXC1Q9P0U4 656 aaPredicted RBP11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 SPATA7Q9P0W8 599 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 ING4Q9UNL4 249 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 TRAV6A0A075B6T7 132 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 DYRK3O43781 588 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 UPK1BO75841 260 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 RPN2P04844 631 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 EPHX1P07099 455 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 CLCN7P51798 805 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 ISL1P61371 349 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 E2F2Q14209 437 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 SPIN4Q56A73 249 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 PARGQ86W56 976 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 TMEM173Q86WV6 379 aaPredicted RBP11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 UFD1Q92890 307 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 CENPOQ9BU64 300 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 CLMPQ9H6B4 373 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 REEP4Q9H6H4 257 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 KRCC1Q9NPI7 259 aaPredicted RBP11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 ZNF225Q9UK10 706 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 ITM2BQ9Y287 266 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 Q9Y3F1 56 aa11.94□□□□□ -0.5
SNRNP48-201ENST00000342415 GABRR3A8MPY1 467 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 WWP2O00308 870 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 PCDH17O14917 1159 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 DHFRP00374 187 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 RB1P06400 928 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 JUPP14923 745 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 MYL9P24844 172 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 GP2P55259 537 aaKnown RBP11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 PIN1Q13526 163 aaPredicted RBP11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 NKG7Q16617 165 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 LY6G5CQ5SRR4 150 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 STEAP3Q658P3 488 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 MRPL10Q7Z7H8 261 aaKnown RBP11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 OR8H3Q8N146 312 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 CRELD1Q96HD1 420 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 FRMD6Q96NE9 622 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 F2RL3Q96RI0 385 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 CCDC3Q9BQI4 270 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 SLC25A37Q9NYZ2 338 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 COQ3Q9NZJ6 369 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 PCDH10Q9P2E7 1040 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 ERVK-11Q9UQG0 969 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 FAM172BPA6NC97 362 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 PI15O43692 258 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 ADH1AP07327 375 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 ACPPP15309 386 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 LIPAP38571 399 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 DGKGP49619 791 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 SF3B4Q15427 424 aaKnown RBP eCLIP11.93□□□□□ -0.52e-6■■■■■ 27
SNRNP48-201ENST00000342415 RGNQ15493 299 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 TUBA3EQ6PEY2 450 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 HSDL2Q6YN16 418 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 CELF2-AS1Q8N7Q2 184 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 ASCC1Q8N9N2 400 aaKnown RBP11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 OR7G3Q8NG95 312 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 C9orf43Q8TAL5 461 aaPredicted RBP11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 SUN5Q8TC36 379 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 ADAP2Q9NPF8 381 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 STX11O75558 287 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 SLC10A3P09131 477 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 OR12D1P0DN82 309 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 MAPK9P45984 424 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 PSMD8P48556 350 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 CRISP1P54107 249 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 BCL7AQ4VC05 210 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 PRAMEF14Q5SWL7 426 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 MANEALQ5VSG8 457 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 PRAMEF13Q5VWM6 474 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 REEP3Q6NUK4 255 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 BHLHB9Q6PI77 547 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 HDDC2Q7Z4H3 204 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 LRR1Q96L50 414 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 UHRF1Q96T88 793 aaPredicted RBP11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 C17orf62Q9BQA9 187 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 EFCAB11Q9BUY7 163 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 XKR8Q9H6D3 395 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 ZNF780BQ9Y6R6 833 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 PCDHGA12O60330 932 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 SMU1Q2TAY7 513 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 BCDIN3DQ7Z5W3 292 aaKnown RBP11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 PARP16Q8N5Y8 322 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 ZBED6CLQ96FA7 236 aaPredicted RBP11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 CAPNS2Q96L46 248 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 MAGIXQ9H6Y5 334 aa11.93□□□□□ -0.5
SNRNP48-201ENST00000342415 ELAC1Q9H777 363 aaKnown RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms