RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 PSORS1C1Q9UIG5 152 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 PCDHGA6Q9Y5G7 932 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 GSAPA4D1B5 854 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 SLC35F4A4IF30 521 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 SLC30A4O14863 429 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 GUCY1B2O75343 617 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 WISP3O95389 354 aaPredicted RBP12.11□□□□□ -0.47
LIG1-221ENST00000613670 CH25HO95992 272 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 C1QCP02747 245 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 MYL9P24844 172 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 SLC19A1P41440 591 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 ZFP36L2P47974 494 aaKnown RBP12.11□□□□□ -0.47
LIG1-221ENST00000613670 RACK1P63244 317 aaKnown RBP12.11□□□□□ -0.47
LIG1-221ENST00000613670 LCN1P1Q5VSP4 162 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 CHST9Q7L1S5 443 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 TAS1R1Q7RTX1 841 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 SLC46A3Q7Z3Q1 461 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 OR8H1Q8NGG4 311 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 FRMD6Q96NE9 622 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 TMEM121BQ9BXQ6 578 aaPredicted RBP12.11□□□□□ -0.47
LIG1-221ENST00000613670 UCK2Q9BZX2 261 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 SMG9Q9H0W8 520 aaKnown RBP12.11□□□□□ -0.47
LIG1-221ENST00000613670 ANKRA2Q9H9E1 313 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 PDFQ9HBH1 243 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 NDRG4Q9ULP0 352 aaKnown RBP12.11□□□□□ -0.47
LIG1-221ENST00000613670 MAPRE3Q9UPY8 281 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 GON4LQ3T8J9 2241 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 MANSC4A6NHS7 340 aaPredicted RBP12.11□□□□□ -0.47
LIG1-221ENST00000613670 MPZL2O60487 215 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 CYP2A6P11509 494 aaPredicted RBP12.11□□□□□ -0.47
LIG1-221ENST00000613670 HEPACAMQ14CZ8 416 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 GPAT3Q53EU6 434 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 CXorf57Q6NSI4 855 aaKnown RBP12.11□□□□□ -0.47
LIG1-221ENST00000613670 ASB18Q6ZVZ8 466 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 ARMCX6Q7L4S7 300 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 ZNF367Q7RTV3 350 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 KLHDC8BQ8IXV7 354 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 IQCF1Q8N6M8 205 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 DCAF4L2Q8NA75 395 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 FAM46DQ8NEK8 389 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 HUS1BQ8NHY5 278 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 SUN5Q8TC36 379 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 KAT2AQ92830 837 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 RRAGCQ9HB90 399 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 EQTNQ9NQ60 294 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 ERVW-1Q9UQF0 538 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 SLC9A8Q9Y2E8 581 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 RPL36Q9Y3U8 105 aaKnown RBP12.11□□□□□ -0.47
LIG1-221ENST00000613670 HSPB11Q9Y547 144 aa12.11□□□□□ -0.47
LIG1-221ENST00000613670 TMEM88BA6NKF7 163 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 CRISP1P54107 249 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 DSTNP60981 165 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 SELENOWP63302 87 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 LRRC26Q2I0M4 334 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 C1QTNF12Q5T7M4 302 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 GHDCQ8N2G8 530 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 FLCNQ8NFG4 579 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 CIDECQ96AQ7 238 aaPredicted RBP12.1□□□□□ -0.47
LIG1-221ENST00000613670 AP2M1Q96CW1 435 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 TEFMQ96QE5 360 aaKnown RBP12.1□□□□□ -0.47
LIG1-221ENST00000613670 CTRCQ99895 268 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 MRPL9Q9BYD2 267 aaKnown RBP12.1□□□□□ -0.47
LIG1-221ENST00000613670 P2RY12Q9H244 342 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 A0A1W2PQ09 198 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 HOXA2O43364 376 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 STATHP02808 62 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 SLC2A2P11168 524 aaPredicted RBP12.1□□□□□ -0.47
LIG1-221ENST00000613670 PTX3P26022 381 aaPredicted RBP12.1□□□□□ -0.47
LIG1-221ENST00000613670 CCND3P30281 292 aaPredicted RBP12.1□□□□□ -0.47
LIG1-221ENST00000613670 COX10Q12887 443 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 CRB2Q5IJ48 1285 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 ATAD3CQ5T2N8 411 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 CRTC1Q6UUV9 634 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 CHPFQ8IZ52 775 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 CELF5Q8N6W0 485 aaKnown RBP12.1□□□□□ -0.47
LIG1-221ENST00000613670 AP3S1Q92572 193 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 MAPKAP1Q9BPZ7 522 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 SERHL2Q9H4I8 314 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 SERHLQ9NQF3 203 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 YIPF1Q9Y548 306 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 A0A1W2PQ72 361 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 ATG13O75143 517 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 CBSLP0DN79 551 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 ATF6P18850 670 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 PAICSP22234 425 aaKnown RBP12.1□□□□□ -0.47
LIG1-221ENST00000613670 CBSP35520 551 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 MAPK12P53778 367 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 RAET1GQ6H3X3 334 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 MEX3DQ86XN8 651 aaKnown RBP12.1□□□□□ -0.47
LIG1-221ENST00000613670 VRK3Q8IV63 474 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 GANCQ8TET4 914 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 TP53INP1Q96A56 240 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 TXNDC15Q96J42 360 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 HRASLS5Q96KN8 279 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 MAGEB10Q96LZ2 347 aaPredicted RBP12.1□□□□□ -0.47
LIG1-221ENST00000613670 NECTIN4Q96NY8 510 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 NEDD4LQ96PU5 975 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 PIP5K1AQ99755 562 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 TSSK6Q9BXA6 273 aa12.1□□□□□ -0.47
LIG1-221ENST00000613670 SPATA2Q9UM82 520 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms