RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 ZNF583Q96ND8 569 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 PHF12Q96QT6 1004 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 REXO4Q9GZR2 422 aaKnown RBP12.11□□□□□ -0.47
SHMT2-229ENST00000557348 TMEM165Q9HC07 324 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 FZD3Q9NPG1 666 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 AGPAT4Q9NRZ5 378 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 TMEM184CQ9NVA4 438 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 ZNF282Q9UDV7 671 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-229ENST00000557348 EBF1Q9UH73 591 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 PLAGL1Q9UM63 463 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-229ENST00000557348 PCDHGA2Q9Y5H1 932 aa12.11□□□□□ -0.47
SHMT2-229ENST00000557348 TCRBV5S2A0A599 114 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 TRBC2A0A5B9 178 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 POM121BA6NF01 834 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 CLDN25C9JDP6 229 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 TBX19O60806 448 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 CLEC3AO75596 197 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 SEC14L2O76054 403 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 LRATO95237 230 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 FKBP9O95302 570 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 ETHE1O95571 254 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 FUCA1P04066 466 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 HOXB9P17482 250 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-229ENST00000557348 CMPK1P30085 196 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 ACSL1P33121 698 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 BMXP51813 675 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 TOP3AQ13472 1001 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-229ENST00000557348 RAB39AQ14964 217 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 TRIM16LQ309B1 348 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 TMEM35AQ53FP2 167 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 AGAP7PQ5VUJ5 663 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 KHDRBS2Q5VWX1 349 aaKnown RBP12.1□□□□□ -0.47
SHMT2-229ENST00000557348 KIAA0895LQ68EN5 471 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 USP51Q70EK9 711 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 CALHM3Q86XJ0 350 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 MICU2Q8IYU8 434 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 PHACTR4Q8IZ21 702 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 ADGRG5Q8IZF4 528 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 EID3Q8N140 333 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 PGBD3Q8N328 593 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 ZNF786Q8N393 782 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 DHRSXQ8N5I4 330 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 TMEM145Q8NBT3 493 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 GPR156Q8NFN8 814 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 OR52E1Q8NGJ3 308 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.1□□□□□ -0.47
SHMT2-229ENST00000557348 HMGB4Q8WW32 186 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 SLCO4A1Q96BD0 722 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 SHDQ96IW2 340 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 EGLN2Q96KS0 407 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 SARGQ9BW04 601 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 RAD21L1Q9H4I0 556 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 SLC25A37Q9NYZ2 338 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 VPS4AQ9UN37 437 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 DUSP12Q9UNI6 340 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 AURKCQ9UQB9 309 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 SH2B3Q9UQQ2 575 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 NEUROG3Q9Y4Z2 214 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 CFAP20Q9Y6A4 193 aaKnown RBP12.1□□□□□ -0.47
SHMT2-229ENST00000557348 DGKBQ9Y6T7 804 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 A0A1W2PPV9 198 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 ATE1O95260 518 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 TGFB1P01137 390 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 RAP2AP10114 183 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 PTPN6P29350 595 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 OR4D2P58180 307 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 GABARAPL2P60520 117 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 TRA2BP62995 288 aaKnown RBP12.1□□□□□ -0.47
SHMT2-229ENST00000557348 PHC1P78364 1004 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 ILF3Q12906 894 aaKnown RBP eCLIP12.1□□□□□ -0.47
SHMT2-229ENST00000557348 PDE7AQ13946 482 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 NR1D2Q14995 579 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 CLCA4Q14CN2 919 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 SKIV2LQ15477 1246 aaKnown RBP12.1□□□□□ -0.47
SHMT2-229ENST00000557348 BROXQ5VW32 411 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 ABI3BPQ7Z7G0 1075 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 SLC9B2Q86UD5 537 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 NUDT13Q86X67 352 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 DCP2Q8IU60 420 aaKnown RBP12.1□□□□□ -0.47
SHMT2-229ENST00000557348 MSRB3Q8IXL7 192 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 DTWD1Q8N5C7 304 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 PIK3C3Q8NEB9 887 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 SRFBP1Q8NEF9 429 aaKnown RBP12.1□□□□□ -0.47
SHMT2-229ENST00000557348 OR10A6Q8NH74 314 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 CDC26Q8NHZ8 85 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 OR1E3Q8WZA6 343 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 HLA-CQ95604 372 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 PPCDCQ96CD2 204 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 BMFQ96LC9 184 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 GUCD1Q96NT3 240 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 NELL2Q99435 816 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 BDH2Q9BUT1 245 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 ACAT2Q9BWD1 397 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 MS4A8Q9BY19 250 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 PCED1AQ9H1Q7 454 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 MAGIXQ9H6Y5 334 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 MRPS30Q9NP92 439 aaKnown RBP12.1□□□□□ -0.47
SHMT2-229ENST00000557348 ZNF639Q9UID6 485 aa12.1□□□□□ -0.47
SHMT2-229ENST00000557348 NDRG2Q9UN36 371 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms