RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 C15orf52Q6ZUT6 534 aaKnown RBP2.34□□□□□ -2.03
CD44-238ENST00000534296 TOM1L2Q6ZVM7 507 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 KCTD9Q7L273 389 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 PIWIL3Q7Z3Z3 882 aaKnown RBP2.34□□□□□ -2.03
CD44-238ENST00000534296 SH2D6Q7Z4S9 175 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 SNX32Q86XE0 403 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 CREBRFQ8IUR6 639 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 THEM5Q8N1Q8 247 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 CARNMT1Q8N4J0 409 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 LRTM2Q8N967 370 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 RNF149Q8NC42 400 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 GANCQ8TET4 914 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 LRRC15Q8TF66 581 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 RAB11FIP5Q9BXF6 653 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 LRRC2Q9BYS8 371 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 C2orf40Q9H1Z8 148 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 KCNK13Q9HB14 408 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 TEKT2Q9UIF3 430 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 LIPT1Q9Y234 373 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 PCDHGA1Q9Y5H4 931 aa2.34□□□□□ -2.03
CD44-238ENST00000534296 IGHV3OR16-10A0A075B7F0 116 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 A0A0B4J203 849 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 A0A1B0GVY2 172 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 A0A1W2PRV1 198 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 CCDC162PA2VCL2 907 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 A4D1N5 150 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 NKX6-3A6NJ46 265 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 M0R296 226 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 TTI1O43156 1089 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 KIF5CO60282 957 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 GMNNO75496 209 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 MTRF1O75570 445 aaKnown RBP2.33□□□□□ -2.04
CD44-238ENST00000534296 CEACAM4O75871 244 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 GLCEO94923 617 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 RPLP0P05388 317 aaKnown RBP2.33□□□□□ -2.04
CD44-238ENST00000534296 LYNP07948 512 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 HLA-DPA1P20036 260 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 OAS2P29728 719 aaKnown RBP2.33□□□□□ -2.04
CD44-238ENST00000534296 OXTRP30559 389 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 STIP1P31948 543 aaKnown RBP2.33□□□□□ -2.04
CD44-238ENST00000534296 OR3A2P47893 321 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 PGFP49763 221 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 CSRP3P50461 194 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 XGP55808 180 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 CLDN15P56746 228 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 IRX4P78413 519 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 DHODHQ02127 395 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 PEX6Q13608 980 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 HIGD2BQ4VC39 106 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 ETFRF1Q6IPR1 90 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 TCEAL6Q6IPX3 200 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 SLC27A4Q6P1M0 643 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 BTNL8Q6UX41 500 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 Q6ZRP5 223 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 CDHR3Q6ZTQ4 885 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 GPRIN3Q6ZVF9 776 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 Q71RC1 249 aaPredicted RBP2.33□□□□□ -2.04
CD44-238ENST00000534296 SIAH3Q8IW03 269 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 LMNTD2Q8IXW0 634 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 Q8NBF4 154 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 LPCAT1Q8NF37 534 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 OR13C5Q8NGS8 318 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 RPLP0P6Q8NHW5 317 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 OCC1Q8TAD7 63 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 MIPOL1Q8TD10 442 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 NPRL2Q8WTW4 380 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 SEPT8Q92599 483 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 RFT1Q96AA3 541 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 PRICKLE1Q96MT3 831 aaPredicted RBP2.33□□□□□ -2.04
CD44-238ENST00000534296 NDNQ99608 321 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 DESI2Q9BSY9 194 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 RPP25Q9BUL9 199 aaKnown RBP2.33□□□□□ -2.04
CD44-238ENST00000534296 VIPAS39Q9H9C1 493 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 RAVER2Q9HCJ3 691 aaKnown RBP2.33□□□□□ -2.04
CD44-238ENST00000534296 GPR173Q9NS66 373 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 IARS2Q9NSE4 1012 aaKnown RBP2.33□□□□□ -2.04
CD44-238ENST00000534296 CWC25Q9NXE8 425 aaPredicted RBP2.33□□□□□ -2.04
CD44-238ENST00000534296 NLGN3Q9NZ94 848 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 FBXL4Q9UKA2 621 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 POMT2Q9UKY4 750 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 SATB2Q9UPW6 733 aa2.33□□□□□ -2.04
CD44-238ENST00000534296 MYH14Q7Z406 1995 aaKnown RBP2.32□□□□□ -2.04
CD44-238ENST00000534296 TRBV5-5A0A0J9YX44 114 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 hCG_38984A0A1B0GV85 526 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 MEX3AA1L020 520 aaKnown RBP2.32□□□□□ -2.04
CD44-238ENST00000534296 SYCE3A1L190 88 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 TRIM64A6NGJ6 449 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 TRIM64BA6NI03 449 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 C2CD4DB7Z1M9 353 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 H3BMM5 538 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 DDX39AO00148 427 aaKnown RBP2.32□□□□□ -2.04
CD44-238ENST00000534296 PI15O43692 258 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 PRDM1O75626 825 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 PNPP00491 289 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 IGHV3-13P01766 116 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 MT-ND2P03891 347 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 UROSP10746 265 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 VDRP11473 427 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 PDHA2P29803 388 aa2.32□□□□□ -2.04
CD44-238ENST00000534296 TIA1P31483 386 aaKnown RBP eCLIP2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms