RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 PAPLNO95428 1278 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 TBX6O95947 436 aaPredicted RBP11.4□□□□□ -0.58
PTPRN-204ENST00000423636 ITGB7P26010 798 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 MANFP55145 182 aaKnown RBP11.4□□□□□ -0.58
PTPRN-204ENST00000423636 CLCA4Q14CN2 919 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 IRF4Q15306 451 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 ZBED5Q49AG3 693 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 XAF1Q6GPH4 301 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 PNCKQ6P2M8 343 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 TTC23LQ6PF05 361 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 NCSTNQ92542 709 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 TESCQ96BS2 214 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 TAMM41Q96BW9 452 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 INSM2Q96T92 566 aaPredicted RBP11.4□□□□□ -0.58
PTPRN-204ENST00000423636 RBM4BQ9BQ04 359 aaKnown RBP11.4□□□□□ -0.58
PTPRN-204ENST00000423636 RBM4Q9BWF3 364 aaKnown RBP11.4□□□□□ -0.58
PTPRN-204ENST00000423636 RAD21L1Q9H4I0 556 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 REEP1Q9H902 201 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 SPHK1Q9NYA1 384 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 ASXL3Q9C0F0 2248 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 ZNF860A6NHJ4 632 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 SLC1A7O00341 560 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 CCNDBP1O95273 360 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 NPPAP01160 153 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 MAPK12P53778 367 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 OLR1P78380 273 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 ZNF763Q0D2J5 394 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 CDK5R2Q13319 367 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 PIP5KL1Q5T9C9 394 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 TNIP2Q8NFZ5 429 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 OR4E2Q8NGC2 313 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 OR8K5Q8NH50 307 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 OR5K1Q8NHB7 308 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 ZFP90Q8TF47 636 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 ATL1Q8WXF7 558 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 IL4I1Q96RQ9 567 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 RSPO3Q9BXY4 272 aaPredicted RBP11.4□□□□□ -0.58
PTPRN-204ENST00000423636 RHBGQ9H310 441 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 RAD18Q9NS91 495 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 TAAR2Q9P1P5 351 aa11.4□□□□□ -0.58
PTPRN-204ENST00000423636 TMPRSS11DO60235 418 aa11.4□□□□□ -0.59
PTPRN-204ENST00000423636 HTR1BP28222 390 aa11.4□□□□□ -0.59
PTPRN-204ENST00000423636 HPCAL1P37235 193 aa11.4□□□□□ -0.59
PTPRN-204ENST00000423636 ISL1P61371 349 aa11.4□□□□□ -0.59
PTPRN-204ENST00000423636 RPP38P78345 283 aaKnown RBP11.4□□□□□ -0.59
PTPRN-204ENST00000423636 SRSF11Q05519 484 aaKnown RBP11.4□□□□□ -0.59
PTPRN-204ENST00000423636 SCARB2Q14108 478 aa11.4□□□□□ -0.59
PTPRN-204ENST00000423636 HIST2H2ACQ16777 129 aaPredicted RBP11.4□□□□□ -0.59
PTPRN-204ENST00000423636 HIST2H2AA3Q6FI13 130 aa11.4□□□□□ -0.59
PTPRN-204ENST00000423636 DEF8Q6ZN54 512 aa11.4□□□□□ -0.59
PTPRN-204ENST00000423636 USP51Q70EK9 711 aa11.4□□□□□ -0.59
PTPRN-204ENST00000423636 TSEN54Q7Z6J9 526 aaKnown RBP11.4□□□□□ -0.59
PTPRN-204ENST00000423636 B3GNT8Q7Z7M8 397 aa11.4□□□□□ -0.59
PTPRN-204ENST00000423636 PACRGLQ8N7B6 248 aa11.4□□□□□ -0.59
PTPRN-204ENST00000423636 VPS37AQ8NEZ2 397 aa11.4□□□□□ -0.59
PTPRN-204ENST00000423636 FAM81AQ8TBF8 368 aa11.4□□□□□ -0.59
PTPRN-204ENST00000423636 TIFAQ96CG3 184 aa11.4□□□□□ -0.59
PTPRN-204ENST00000423636 ASPSCR1Q9BZE9 553 aa11.4□□□□□ -0.59
PTPRN-204ENST00000423636 MIR1-1HGQ9H1L0 117 aa11.4□□□□□ -0.59
PTPRN-204ENST00000423636 IL1RAPQ9NPH3 570 aa11.4□□□□□ -0.59
PTPRN-204ENST00000423636 ZFR2Q9UPR6 939 aaKnown RBP11.4□□□□□ -0.59
PTPRN-204ENST00000423636 CORINQ9Y5Q5 1042 aa11.4□□□□□ -0.59
PTPRN-204ENST00000423636 C2orf16Q68DN1 1984 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 A0A1W2PQU0 124 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 DYTNA2CJ06 578 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 H0YIV9 168 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 FAM20BO75063 409 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 DNAJB6O75190 326 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 SLC35G4P0C7Q5 338 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 HOXA9P31269 272 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 RFX3P48380 749 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 SP140Q13342 867 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 AQP6Q13520 282 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 DMC1Q14565 340 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 PDGFRLQ15198 375 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 MLF2Q15773 248 aaPredicted RBP11.39□□□□□ -0.59
PTPRN-204ENST00000423636 NPTX1Q15818 432 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 CST6Q15828 149 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 EXOC3L2Q2M3D2 409 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 ZDHHC20Q5W0Z9 365 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 CEACAM20Q6UY09 585 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 C17orf64Q86WR6 236 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 CPA6Q8N4T0 437 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 GAB3Q8WWW8 586 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 FUNDC2Q9BWH2 189 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 OR52A5Q9H2C5 316 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 REEP4Q9H6H4 257 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 C3orf18Q9UK00 162 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 MT-ND2P03891 347 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 TPP2P29144 1249 aaPredicted RBP11.39□□□□□ -0.59
PTPRN-204ENST00000423636 PTPN5P54829 565 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 NCS1P62166 190 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 PPP2CBP62714 309 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 PPP2CAP67775 309 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 PPP2R2DQ66LE6 453 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 GALNT18Q6P9A2 607 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.39□□□□□ -0.59
PTPRN-204ENST00000423636 TANKQ92844 425 aa11.39□□□□□ -0.59
PTPRN-204ENST00000423636 SAMD4AQ9UPU9 718 aaKnown RBP11.39□□□□□ -0.59
PTPRN-204ENST00000423636 MDC1Q14676 2089 aaKnown RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms