RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 RPA4Q13156 261 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 LASP1Q14847 261 aaKnown RBP1.8□□□□□ -2.12
VPS13A-206ENST00000376646 SGCBQ16585 318 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 LRRC38Q5VT99 294 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 PRAMEF8Q5VWM4 474 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 ZNF770Q6IQ21 691 aaPredicted RBP1.8□□□□□ -2.12
VPS13A-206ENST00000376646 KLHL10Q6JEL2 608 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 SLC24A5Q71RS6 500 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 PRUNE1Q86TP1 453 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 SIAH3Q8IW03 269 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 CCDC60Q8IWA6 550 aaPredicted RBP1.8□□□□□ -2.12
VPS13A-206ENST00000376646 TDHQ8IZJ6 230 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 PRSS35Q8N3Z0 413 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 MARVELD2Q8N4S9 558 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 SMYD1Q8NB12 490 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 OR10G8Q8NGN5 311 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 SAP25Q8TEE9 199 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 PDLIM5Q96HC4 596 aaKnown RBP1.8□□□□□ -2.12
VPS13A-206ENST00000376646 ZNF414Q96IQ9 312 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 TSSK2Q96PF2 358 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 NEDD4LQ96PU5 975 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 PRMT1Q99873 361 aaKnown RBP1.8□□□□□ -2.12
VPS13A-206ENST00000376646 C17orf62Q9BQA9 187 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 UBQLN3Q9H347 655 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 EGLN3Q9H6Z9 239 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 RNPEPL1Q9HAU8 725 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 MID1IP1Q9NPA3 183 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 SPG21Q9NZD8 308 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 TRPC4Q9UBN4 977 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 FBXW2Q9UKT8 454 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 NCKAP1Q9Y2A7 1128 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 COLEC10Q9Y6Z7 277 aa1.8□□□□□ -2.12
VPS13A-206ENST00000376646 ABCC9O60706 1549 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 C13orf42A0A1B0GVH6 325 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 A0A1W2PPR1 153 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 PGRMC2O15173 223 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 KIF5CO60282 957 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 SEC24AO95486 1093 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 YES1P07947 543 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 DNAH10OSP0CZ25 163 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 SLC2A2P11168 524 aaPredicted RBP1.79□□□□□ -2.12
VPS13A-206ENST00000376646 CASP3P42574 277 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 KHKP50053 298 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 GSCP56915 257 aaPredicted RBP1.79□□□□□ -2.12
VPS13A-206ENST00000376646 PAX8Q06710 450 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 ARHGAP1Q07960 439 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 TEFQ10587 303 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 NPRL3Q12980 569 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 TRIM29Q14134 588 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 PTPN14Q15678 1187 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 HFEQ30201 348 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 C2orf76Q3KRA6 126 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 AARDQ4LEZ3 155 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 IFI44LQ53G44 452 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 PLBD1Q6P4A8 553 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 ALKBH5Q6P6C2 394 aaKnown RBP1.79□□□□□ -2.12
VPS13A-206ENST00000376646 CATSPERDQ86XM0 798 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 ERC1Q8IUD2 1116 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 KLHDC8AQ8IYD2 350 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 GPC2Q8N158 579 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 TCEANCQ8N8B7 351 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 ARL10Q8N8L6 244 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 LPCAT1Q8NF37 534 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 BCL2L2Q92843 193 aaPredicted RBP1.79□□□□□ -2.12
VPS13A-206ENST00000376646 FAM46BQ96A09 425 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 RFT1Q96AA3 541 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 RASL10BQ96S79 203 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 KRT12Q99456 494 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 LPAR4Q99677 370 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 ACPTQ9BZG2 426 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 NACAP1Q9BZK3 213 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 WWTR1Q9GZV5 400 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 DPEP2Q9H4A9 486 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 C5orf66Q9H5L9 145 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 AKIRIN1Q9H9L7 192 aaPredicted RBP1.79□□□□□ -2.12
VPS13A-206ENST00000376646 DBNDD1Q9H9R9 158 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 RPF1Q9H9Y2 349 aaKnown RBP1.79□□□□□ -2.12
VPS13A-206ENST00000376646 MRPL17Q9NRX2 175 aaKnown RBP1.79□□□□□ -2.12
VPS13A-206ENST00000376646 STAU2Q9NUL3 570 aaKnown RBP eCLIP1.79□□□□□ -2.12
VPS13A-206ENST00000376646 TBC1D13Q9NVG8 400 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 AKAP7Q9P0M2 348 aaPredicted RBP1.79□□□□□ -2.12
VPS13A-206ENST00000376646 IL36AQ9UHA7 158 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 PRDM4Q9UKN5 801 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 TMED7Q9Y3B3 224 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 A0A087WUV0 522 aaPredicted RBP1.79□□□□□ -2.12
VPS13A-206ENST00000376646 MAGEB16A2A368 324 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 C5orf51A6NDU8 294 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 DDX39AO00148 427 aaKnown RBP1.79□□□□□ -2.12
VPS13A-206ENST00000376646 MLNRO43193 412 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 BAG2O95816 211 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 IGHV3-13P01766 116 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 MT-ND2P03891 347 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 MT-ND3P03897 115 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 P4HA1P13674 534 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 RPL35AP18077 110 aaKnown RBP1.79□□□□□ -2.12
VPS13A-206ENST00000376646 HLA-DPA1P20036 260 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 SRD5A2P31213 254 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 SMSP52788 366 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 KIAA1024LP59773 190 aa1.79□□□□□ -2.12
VPS13A-206ENST00000376646 CSNK2BP67870 215 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms