RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 C14orf105Q9NVL8 296 aa17.02■□□□□ 0.31
NPHP4-209ENST00000489180 ARL6IP5O75915 188 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 SLITRK5O94991 958 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 LIPKQ5VXJ0 399 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 ZC3H10Q96K80 434 aaKnown RBP17.01■□□□□ 0.31
NPHP4-209ENST00000489180 NEUROD4Q9HD90 331 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 METTL21EPA6NDL7 271 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 L7N2F9 121 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 SOCS2O14508 198 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 OAZ2O95190 189 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 RPS3P23396 243 aaKnown RBP eCLIP17.01■□□□□ 0.31
NPHP4-209ENST00000489180 TBRG1Q3YBR2 411 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 KCTD9Q7L273 389 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 OR51G2Q8NGK0 314 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 C17orf62Q9BQA9 187 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 EBF1Q9UH73 591 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 FBXL3Q9UKT7 428 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 NOP16Q9Y3C1 178 aaKnown RBP17.01■□□□□ 0.31
NPHP4-209ENST00000489180 NARSO43776 548 aaKnown RBP17.01■□□□□ 0.31
NPHP4-209ENST00000489180 HLA-EP13747 358 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 NRG3P56975 720 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 ZNF227Q86WZ6 799 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 MRGPRX2Q96LB1 330 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 MEAF6Q9HAF1 191 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 ZDHHC4Q9NPG8 344 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 COL1A1P02452 1464 aaPredicted RBP17.01■□□□□ 0.31
NPHP4-209ENST00000489180 BHMG1C9JSJ3 638 aaPredicted RBP17.01■□□□□ 0.31
NPHP4-209ENST00000489180 SCDO00767 359 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 PROM1O43490 865 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 OAS1P00973 400 aaKnown RBP17.01■□□□□ 0.31
NPHP4-209ENST00000489180 MAGEA2P43356 314 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 GATMP50440 423 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 PSMA6P60900 246 aaKnown RBP17.01■□□□□ 0.31
NPHP4-209ENST00000489180 PPIGQ13427 754 aaKnown RBP eCLIP17.01■□□□□ 0.311e-6■■■□□ 16
NPHP4-209ENST00000489180 UNC50Q53HI1 259 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 RAB6CQ53S08 254 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 AMIGO1Q86WK6 493 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 CAMKVQ8NCB2 501 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 SLC7A6OSQ96CW6 309 aaPredicted RBP17.01■□□□□ 0.31
NPHP4-209ENST00000489180 NXPE2Q96DL1 559 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 ASPNQ9BXN1 380 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 RAB6CQ9H0N0 254 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 PLEKHA6Q9Y2H5 1048 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 ASB3Q9Y575 518 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 CAPN5O15484 640 aaPredicted RBP17.01■□□□□ 0.31
NPHP4-209ENST00000489180 VAMP2P63027 116 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 EXOC3L2Q2M3D2 409 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 REEP3Q6NUK4 255 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 SIAH1Q8IUQ4 282 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 OR56A1Q8NGH5 318 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 BRI3BPQ8WY22 251 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 KCNJ9Q92806 393 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 SPATA9Q9BWV2 254 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 B4GALT6Q9UBX8 382 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 HCN2Q9UL51 889 aa17.01■□□□□ 0.31
NPHP4-209ENST00000489180 OR7A10O76100 309 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 SLC35E2BP0CK96 405 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 HOXC12P31275 282 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 GINS1Q14691 196 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 TMEM17Q86X19 198 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 LINC00471Q8N535 108 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 PNLDC1Q8NA58 520 aaKnown RBP17■□□□□ 0.31
NPHP4-209ENST00000489180 THAP6Q8TBB0 222 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 PHOX2BQ99453 314 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 RDH8Q9NYR8 311 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 A0A0G2JPF8 293 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 HNRNPCL3B7ZW38 293 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 DLGAP1O14490 977 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 HNRNPCL4P0DMR1 293 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 SLC11A1P49279 550 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 CDKN2DP55273 166 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 ZNF763Q0D2J5 394 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 CRHR2Q13324 411 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 COL9A2Q14055 689 aaPredicted RBP17■□□□□ 0.31
NPHP4-209ENST00000489180 DSG2Q14126 1118 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 NOXRED1Q6NXP6 359 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 TMCO2Q7Z6W1 182 aaPredicted RBP17■□□□□ 0.31
NPHP4-209ENST00000489180 TMEM126BQ8IUX1 230 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 ZNF420Q8TAQ5 688 aaPredicted RBP17■□□□□ 0.31
NPHP4-209ENST00000489180 C17orf50Q8WW18 174 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 CCM2LQ9NUG4 571 aaPredicted RBP17■□□□□ 0.31
NPHP4-209ENST00000489180 CARD8Q9Y2G2 431 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 E7EQ34 232 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 TNFRSF10BO14763 440 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 TYRP14679 529 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 CD97P48960 835 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 TMBIM6P55061 237 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 PDGFRLQ15198 375 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 SPAG16Q8N0X2 631 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 OR9A1PQ8NGU1 263 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 SHKBP1Q8TBC3 707 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 FANK1Q8TC84 345 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 ZNF382Q96SR6 550 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 DPH2Q9BQC3 489 aaPredicted RBP17■□□□□ 0.31
NPHP4-209ENST00000489180 PHOSPHO1Q8TCT1 267 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 ASB12Q8WXK4 309 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 STYXL1Q9Y6J8 313 aa17■□□□□ 0.31
NPHP4-209ENST00000489180 A0A1W2PPK0 400 aa16.99■□□□□ 0.31
NPHP4-209ENST00000489180 MTMR11A4FU01 709 aa16.99■□□□□ 0.31
NPHP4-209ENST00000489180 A8MU76 341 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms