RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 AKR1C8PQ5T2L2 129 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 GRTP1Q5TC63 336 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ZFP1Q6P2D0 407 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 TRIM46Q7Z4K8 759 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 FRMD5Q7Z6J6 570 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CT45A3Q8NHU0 189 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 IL1F10Q8WWZ1 152 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 FOXJ1Q92949 421 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 CD101Q93033 1021 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 RFKQ969G6 155 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 MUCL1Q96DR8 90 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 TSPAN18Q96SJ8 248 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 VPS25Q9BRG1 176 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ALG12Q9BV10 488 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 NUDT4Q9NZJ9 180 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 ATXN10Q9UBB4 475 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 SUSD2Q9UGT4 822 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 GNG8Q9UK08 70 aa4.51□□□□□ -1.69
SCN1A-202ENST00000375405 LOC105369274A0A096LPK9 316 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 FAM230AA0A1W2PPH8 454 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 A0A1W2PQ45 241 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 A0A1W2PQY0 241 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ACKR2O00590 384 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 MT-CYBP00156 380 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 RPLP1P05386 114 aaKnown RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 G6PDP11413 515 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 UBL4AP11441 157 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 PRKACBP22694 351 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 POU3F4P49335 361 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CXCR3P49682 368 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 PSMB2P49721 201 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 RELBQ01201 579 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 SLC3A1Q07837 685 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 EXOSC2Q13868 293 aaKnown RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 MLF2Q15773 248 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 FAM69BQ5VUD6 431 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 PPP1R18Q6NYC8 613 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 TSPAN33Q86UF1 283 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 SLC35F3Q8IY50 421 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 OR4N4Q8N0Y3 316 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 GPR137CQ8N3F9 429 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 OR8K3Q8NH51 312 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CASKIN2Q8WXE0 1202 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 LPGAT1Q92604 370 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 SECISBP2Q96T21 854 aaKnown RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ADAM2Q99965 735 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 WDR18Q9BV38 432 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 TTTY10Q9BZA0 68 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CD320Q9NPF0 282 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 COQ3Q9NZJ6 369 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 DERAQ9Y315 318 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 MMACHCQ9Y4U1 282 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CTTNBP2Q8WZ74 1663 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 BRWD1Q9NSI6 2320 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 D6RAR5 112 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 DNASE2O00115 360 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 BHLHE40O14503 412 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ALOX15BO15296 676 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 GP1BBP13224 206 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 AMY2BP19961 511 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 PTNP21246 168 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 HOXA9P31269 272 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 HOXA1P49639 335 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CORO7P57737 925 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 FGFBP1Q14512 234 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 HNF4GQ14541 408 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF595Q8IYB9 648 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 SUN5Q8TC36 379 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 HM13Q8TCT9 377 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF606Q8WXB4 792 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 NXNL1Q96CM4 212 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 VCPIP1Q96JH7 1222 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 OR52E6Q96RD3 313 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ADAM19Q9H013 955 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 TCF7L2Q9NQB0 619 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 C1orf109Q9NX04 203 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 MARCH2Q9P0N8 246 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 COPZ2Q9P299 210 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 KLHL13Q9P2N7 655 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 OR14J1Q9UGF5 321 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CORO1CQ9ULV4 474 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CUL7Q14999 1698 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 NPIPA5A0A0B4J1W7 369 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 A0A1W2PPV4 95 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 KIAA1324LA8MWY0 1029 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 CDC7O00311 574 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 PIAS1O75925 651 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 STATHP02808 62 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 SYN1P17600 705 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 TYRP1P17643 537 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 SERPINA2P20848 420 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 GABRR2P28476 465 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 RFC3P40938 356 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 RFX5P48382 616 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 TARBP2Q15633 366 aaKnown RBP4.5□□□□□ -1.69
SCN1A-202ENST00000375405 ADRM1Q16186 407 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 Q4G0T1 1027 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 REP15Q6BDI9 236 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 KCNMB4Q86W47 210 aa4.5□□□□□ -1.69
SCN1A-202ENST00000375405 UNC93AQ86WB7 457 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms