RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 TSSK2Q96PF2 358 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 DPEP2Q9H4A9 486 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 PANK3Q9H999 370 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 GPN1Q9HCN4 374 aaPredicted RBP3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 PDRG1Q9NUG6 133 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 ITGA11Q9UKX5 1188 aa3.77□□□□□ -1.81
SMCHD1-204ENST00000581226 IQCMA0A1B0GVH7 501 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 NKX6-3A6NJ46 265 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 ERI2A8K979 691 aaKnown RBP3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 IFIT3O14879 490 aaKnown RBP3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 PI15O43692 258 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 RPLP0P05388 317 aaKnown RBP3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 GOT1P17174 413 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 C4BPBP20851 252 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 GIFP27352 417 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 NPBWR1P48145 328 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 RBP5P82980 135 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 FOLH1Q04609 750 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 PTK6Q13882 451 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 CASC4Q6P4E1 433 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 C3P1Q6ZMU1 363 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 GPRIN3Q6ZVF9 776 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 GALNTL5Q7Z4T8 443 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 CCDC185Q8N715 623 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 OR52B6Q8NGF0 335 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 FAM222BQ8WU58 562 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 CORO2AQ92828 525 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 SGF29Q96ES7 293 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 C3orf14Q9HBI5 128 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 NOCTQ9UK39 431 aaKnown RBP3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 KLK13Q9UKR3 277 aa3.76□□□□□ -1.81
SMCHD1-204ENST00000581226 A0A0B4J203 849 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 YDJCA8MPS7 323 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 A8MXK9 166 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 NXPH4O95158 308 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 CASTP20810 708 aaKnown RBP3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 CTNNA2P26232 953 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 SHC1P29353 583 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 TLX1P31314 330 aaPredicted RBP3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 GPR183P32249 361 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 CAPGP40121 348 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 KRTAP10-12P60413 245 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 ERVK-16P61578 105 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 BTG1P62324 171 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 PAX8Q06710 450 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 CETN1Q12798 172 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 BFSP1Q12934 665 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 ABRQ12979 859 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 GRB14Q14449 540 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 PPA1Q15181 289 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 MS4A18Q3C1V0 323 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 LRRC37A5PQ49AS3 106 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 KLHL10Q6JEL2 608 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 MSANTD1Q6ZTZ1 278 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 C15orf52Q6ZUT6 534 aaKnown RBP3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 TRMT11Q7Z4G4 463 aaKnown RBP3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 ANKRD46Q86W74 232 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 ZC3H3Q8IXZ2 948 aaKnown RBP3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 TEX26Q8N6G2 289 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 NHLRC2Q8NBF2 726 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 CHPT1Q8WUD6 406 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 MR1Q95460 341 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 CCDC114Q96M63 670 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 GAL3ST4Q96RP7 486 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 PAPOLGQ9BWT3 736 aaKnown RBP3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 LSG1Q9H089 658 aaKnown RBP3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 PARLQ9H300 379 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 C5orf66Q9H5L9 145 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 THAP10Q9P2Z0 257 aaPredicted RBP3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 SATB2Q9UPW6 733 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 PCDHGA1Q9Y5H4 931 aa3.75□□□□□ -1.81
SMCHD1-204ENST00000581226 CACNA1FO60840 1977 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 MYH14Q7Z406 1995 aaKnown RBP3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 IGHV4-30-2A0A087WSY4 118 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 KBTBD13C9JR72 458 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 ST8SIA3O43173 380 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 LRCH4O75427 683 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 MTRF1O75570 445 aaKnown RBP3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 POP4O95707 220 aaKnown RBP3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 ACADSP16219 412 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 PIK3R1P27986 724 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 OXTRP30559 389 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 KCNJ1P48048 391 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 SLC8A3P57103 927 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 IRX6P78412 446 aaPredicted RBP3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 SPANXN4Q5MJ08 99 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 ARMC3Q5W041 872 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 ZNF770Q6IQ21 691 aaPredicted RBP3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 FAM131BQ86XD5 332 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 UXS1Q8NBZ7 420 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 OR9Q2Q8NGE9 314 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 RASL10AQ92737 203 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 LURAP1Q96LR2 239 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 PCDHB18PQ96TA0 734 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 PARK7Q99497 189 aaKnown RBP3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 SOSTQ9BQB4 213 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 PYGO2Q9BRQ0 406 aa3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 DBF4Q9UBU7 674 aaPredicted RBP3.74□□□□□ -1.81
SMCHD1-204ENST00000581226 KLK11Q9UBX7 282 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms