RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 H3BM21 787 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 MATN4O95460 622 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 APOC3P02656 99 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 CSTBP04080 98 aaKnown RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 CMPK1P30085 196 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 HTR2BP41595 481 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 TARDBPQ13148 414 aaKnown RBP eCLIP6.98□□□□□ -1.29
VPS53-204ENST00000437048 TIGD3Q6B0B8 471 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 LRRC28Q86X40 367 aaPredicted RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 C22orf15Q8WYQ4 148 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 PDCD2LQ9BRP1 358 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 CDT1Q9H211 546 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 SLC38A1Q9H2H9 487 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 OPA3Q9H6K4 179 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 COMMD3Q9UBI1 195 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 BCL9LQ86UU0 1499 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 AIPO00170 330 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 SPTLC1O15269 473 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 KCNJ13O60928 360 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 LRCH4O75427 683 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 S1PR1P21453 382 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 VAMP1P23763 118 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 ARF3P61204 181 aaPredicted RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 ARF1P84077 181 aaKnown RBP6.98□□□□□ -1.29
VPS53-204ENST00000437048 CPSF6Q16630 551 aaKnown RBP eCLIP6.98□□□□□ -1.29
VPS53-204ENST00000437048 CD163Q86VB7 1156 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 OR2T33Q8NG76 320 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 ZDHHC12Q96GR4 267 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 C10orf90Q96M02 699 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 MED18Q9BUE0 208 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 RNF121Q9H920 327 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 BRD7Q9NPI1 651 aa6.98□□□□□ -1.29
VPS53-204ENST00000437048 NPIPA5A0A0B4J1W7 369 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 ARHGAP1Q07960 439 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 ARFRP1Q13795 201 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 QPCTQ16769 361 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 VASH1Q7L8A9 365 aaPredicted RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 KCTD20Q7Z5Y7 419 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 ADAMTS16Q8TE57 1224 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 FOXRED1Q96CU9 486 aaPredicted RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 ARL6Q9H0F7 186 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 IPPKQ9H8X2 491 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 SDHAF2Q9NX18 166 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 RIMKLBQ9ULI2 386 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 BRAT1Q6PJG6 821 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 ARSKQ6UWY0 536 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 LARP4Q71RC2 724 aaKnown RBP eCLIP6.97□□□□□ -1.29
VPS53-204ENST00000437048 SYT13Q7L8C5 426 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 KBTBD6Q86V97 674 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 LRRC56Q8IYG6 542 aaPredicted RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 KIAA1191Q96A73 305 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 RGMAQ96B86 450 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 TREX2Q9BQ50 279 aaPredicted RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 SPON1Q9HCB6 807 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 PTPRHQ9HD43 1115 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 PAQR5Q9NXK6 330 aaPredicted RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 LCMT2O60294 686 aaKnown RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 LATS1O95835 1130 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 PRKCGP05129 697 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 LINC00032P0C843 101 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 RFC2P35250 354 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 GRM5P41594 1212 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 CARD16Q5EG05 197 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 PAPD4Q6PIY7 484 aaKnown RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 CDC7O00311 574 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 STK25O00506 426 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 HTR1AP08908 422 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 PIM1P11309 404 aaPredicted RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 CSNK2A2P19784 350 aaPredicted RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 GPR143P51810 404 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 HMGCS2P54868 508 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 TEKQ02763 1124 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 FRG2Q64ET8 278 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 ENPP7Q6UWV6 458 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 KLHL15Q96M94 604 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 FRG2BQ96QU4 278 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 KCNU1A8MYU2 1149 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 SULT1C4O75897 302 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 DIRAS3O95661 229 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 PTGIRP43119 386 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 RGS19P49795 217 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 ZNF321PQ8N8H1 164 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 OR6T1Q8NGN1 323 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 KCNH6Q9H252 994 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 VPS29Q9UBQ0 182 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 RAD51DO75771 328 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 LY86O95711 162 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 APBA3O96018 575 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 JUPP14923 745 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 CNTN2Q02246 1040 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 RAB39AQ14964 217 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 UBXN2BQ14CS0 331 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 TGFBIQ15582 683 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 FAM98CQ17RN3 349 aaKnown RBP6.97□□□□□ -1.29
VPS53-204ENST00000437048 RNF44Q7L0R7 432 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 EEPD1Q7L9B9 569 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 TICAM1Q8IUC6 712 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 MFSD6LQ8IWD5 586 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 SYNPOQ8N3V7 929 aa6.97□□□□□ -1.29
VPS53-204ENST00000437048 CMASQ8NFW8 434 aaPredicted RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms