RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 M0R082 166 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 TSPAN4O14817 238 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 ASNA1O43681 348 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 DNAJB1P25685 340 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 HBA1P69905 142 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 C2orf80Q0P641 193 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 BTG3Q14201 252 aaPredicted RBP8.33□□□□□ -1.08
USP40-203ENST00000427112 ZNF404Q494X3 552 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 BCL7AQ4VC05 210 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 LIPKQ5VXJ0 399 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 PTCHD4Q6ZW05 846 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 UBE2Q1Q7Z7E8 422 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 PTOV1Q86YD1 416 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 TMEM25Q86YD3 366 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 ARMC8Q8IUR7 673 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 PEX5LQ8IYB4 626 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 ZZZ3Q8IYH5 903 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 CFAP206Q8IYR0 622 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 PARP16Q8N5Y8 322 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 ZNF675Q8TD23 568 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 GGHQ92820 318 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 KLK6Q92876 244 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 GPN2Q9H9Y4 310 aaPredicted RBP8.33□□□□□ -1.08
USP40-203ENST00000427112 KCNK12Q9HB15 430 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 TRPC4Q9UBN4 977 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 OARD1Q9Y530 152 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 YIPF1Q9Y548 306 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 HCFC2Q9Y5Z7 792 aa8.33□□□□□ -1.08
USP40-203ENST00000427112 MAP1BP46821 2468 aaKnown RBP8.33□□□□□ -1.08
USP40-203ENST00000427112 ZSCAN5BA6NJL1 495 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 ARHGEF9O43307 516 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 PTPN5P54829 565 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 TTLL9Q3SXZ7 439 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 TYW3Q6IPR3 259 aaKnown RBP8.32□□□□□ -1.08
USP40-203ENST00000427112 PAMR1Q6UXH9 720 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 AQP11Q8NBQ7 271 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 APH1BQ8WW43 257 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 EXOSC8Q96B26 276 aaKnown RBP8.32□□□□□ -1.08
USP40-203ENST00000427112 FUBP3Q96I24 572 aaKnown RBP eCLIP8.32□□□□□ -1.08
USP40-203ENST00000427112 TRNT1Q96Q11 434 aaKnown RBP8.32□□□□□ -1.08
USP40-203ENST00000427112 CLSTN3Q9BQT9 956 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 SPNS1Q9H2V7 528 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 EQTNQ9NQ60 294 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 VPS9D1Q9Y2B5 631 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 KLHL20Q9Y2M5 609 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 PCDHGA6Q9Y5G7 932 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 SPAG17Q6Q759 2223 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 CELSR3Q9NYQ7 3312 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 FEZF1A0PJY2 475 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 PDZK1P1A8MUH7 402 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 WASH3PC4AMC7 463 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 H3BSH0 61 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 OR10H3O60404 316 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 AP2A2O94973 939 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 C8orf89P0DMQ9 161 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 AOAHP28039 575 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 DNAJA1P31689 397 aaKnown RBP8.32□□□□□ -1.08
USP40-203ENST00000427112 WASP42768 502 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 TAS2R50P59544 299 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 NTHL1P78549 312 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 PTSQ03393 145 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 ILF2Q12905 390 aaKnown RBP8.32□□□□□ -1.08
USP40-203ENST00000427112 ACOX1Q15067 660 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 MTFR2Q6P444 385 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 NRARPQ7Z6K4 114 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 KLHDC8BQ8IXV7 354 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 METTL4Q8N3J2 472 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 SYT14Q8NB59 555 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 B3GNT7Q8NFL0 401 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 DYNC2LI1Q8TCX1 351 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 CD99L2Q8TCZ2 262 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 RAET1EQ8TD07 263 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 ADAMTS16Q8TE57 1224 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 GTF3C2Q8WUA4 911 aaPredicted RBP8.32□□□□□ -1.08
USP40-203ENST00000427112 DEPDC7Q96QD5 511 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 SLIRPQ9GZT3 109 aaKnown RBP8.32□□□□□ -1.08
USP40-203ENST00000427112 GORASP2Q9H8Y8 452 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 DNAJC11Q9NVH1 559 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 ZNF639Q9UID6 485 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 FAM32AQ9Y421 112 aaKnown RBP8.32□□□□□ -1.08
USP40-203ENST00000427112 RTTNQ86VV8 2226 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 PRAMEF33A0A0G2JMD5 474 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 ARNTLO00327 626 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 PRAMEF10O60809 474 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 RFPL2O75678 378 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 NCR1O76036 304 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 FCER2P06734 321 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 HMGA1P17096 107 aaKnown RBP8.32□□□□□ -1.08
USP40-203ENST00000427112 IFNA8P32881 189 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 CNR2P34972 360 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 RAB8AP61006 207 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 GRSF1Q12849 480 aaKnown RBP eCLIP8.32□□□□□ -1.08
USP40-203ENST00000427112 PPIGQ13427 754 aaKnown RBP eCLIP8.32□□□□□ -1.089e-7■■□□□ 12.7
USP40-203ENST00000427112 IRF3Q14653 427 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 GRIN2CQ14957 1233 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 ARSIQ5FYB1 569 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 ZC3H12BQ5HYM0 836 aaKnown RBP8.32□□□□□ -1.08
USP40-203ENST00000427112 HSD11B1LQ7Z5J1 315 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 RNF180Q86T96 592 aa8.32□□□□□ -1.08
USP40-203ENST00000427112 THOC6Q86W42 341 aaKnown RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms