RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 NFKB2Q00653 900 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 SMCO1Q147U7 214 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 C18orf21Q32NC0 220 aaPredicted RBP9□□□□□ -0.97
COL28A1-201ENST00000399429 UGT3A2Q3SY77 523 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 GLCCI1Q86VQ1 547 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 IFNL1Q8IU54 200 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 BOLLQ8N9W6 283 aaKnown RBP9□□□□□ -0.97
COL28A1-201ENST00000399429 PJA1Q8NG27 643 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 OR9Q2Q8NGE9 314 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 HMGCLL1Q8TB92 370 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 GATAD2BQ8WXI9 593 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 NTAN1Q96AB6 310 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 CREB3L1Q96BA8 519 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 AP2M1Q96CW1 435 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 INPP5KQ9BT40 448 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 TUBB1Q9H4B7 451 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 GTF2IRD1Q9UHL9 959 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 KLHL21Q9UJP4 597 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 NUP214P35658 2090 aaPredicted RBP9□□□□□ -0.97
COL28A1-201ENST00000399429 KLRG2A4D1S0 409 aaPredicted RBP9□□□□□ -0.97
COL28A1-201ENST00000399429 HAS3O00219 553 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 THP07101 528 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 HTR1AP08908 422 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 ODC1P11926 461 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 NOS3P29474 1203 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 PPP2R1BP30154 601 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 HOXA10P31260 410 aaPredicted RBP9□□□□□ -0.97
COL28A1-201ENST00000399429 RHOAP61586 193 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 LRRC32Q14392 662 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 TEAD4Q15561 434 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 CLEC12AQ5QGZ9 265 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 GCNT6Q5T4J0 391 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 NBPF12Q5TAG4 269 aaPredicted RBP9□□□□□ -0.97
COL28A1-201ENST00000399429 ELP2Q6IA86 826 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 SLC25A25Q6KCM7 469 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 LETMD1Q6P1Q0 360 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 SAMD7Q7Z3H4 446 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 KCTD20Q7Z5Y7 419 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 TAF8Q7Z7C8 310 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 TMEM179BQ7Z7N9 219 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 ENTHD1Q8IYW4 607 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 CRYBG2Q8N1P7 616 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 CFAP52Q8N1V2 620 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 ZNF433Q8N7K0 673 aaPredicted RBP9□□□□□ -0.97
COL28A1-201ENST00000399429 ZNF614Q8N883 585 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 RHEBL1Q8TAI7 183 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 MAL2Q969L2 176 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 FBXO32Q969P5 355 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 ZNF419Q96HQ0 510 aaPredicted RBP9□□□□□ -0.97
COL28A1-201ENST00000399429 FOPNLQ96NB1 174 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 C3orf14Q9HBI5 128 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 HPF1Q9NWY4 346 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 PCDHB9Q9Y5E1 797 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 CACNA1SQ13698 1873 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 SMIM28A0A1B0GU29 152 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 PFKMP08237 780 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 BCKDHAP12694 445 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 ZNF250P15622 560 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 PVALBP20472 110 aaPredicted RBP9□□□□□ -0.97
COL28A1-201ENST00000399429 GRK1Q15835 563 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 GRIK4Q16099 956 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 SMYD5Q6GMV2 418 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 CLEC20AQ6ZU45 233 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 LINGO2Q7L985 606 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 SLITRK4Q8IW52 837 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 MFSD6LQ8IWD5 586 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 DNAJC22Q8N4W6 341 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 ZNF680Q8NEM1 530 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 OR6J1Q8NGC5 347 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 OR5AK3PQ8NH89 298 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 RPLP0P6Q8NHW5 317 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 MAPKAP1Q9BPZ7 522 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 DUSP26Q9BV47 211 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 PIGUQ9H490 435 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 RBFOX1Q9NWB1 397 aaKnown RBP9□□□□□ -0.97
COL28A1-201ENST00000399429 PRG3Q9Y2Y8 225 aaPredicted RBP9□□□□□ -0.97
COL28A1-201ENST00000399429 HRH3Q9Y5N1 445 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 PHRF1Q9P1Y6 1649 aaKnown RBP9□□□□□ -0.97
COL28A1-201ENST00000399429 A0A1W2PPL8 197 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 HCN1O60741 890 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 HPGDSO60760 199 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 MRPS14O60783 128 aaKnown RBP9□□□□□ -0.97
COL28A1-201ENST00000399429 RHOCP08134 193 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 ANXA4P09525 319 aaPredicted RBP9□□□□□ -0.97
COL28A1-201ENST00000399429 OGNP20774 298 aaKnown RBP9□□□□□ -0.97
COL28A1-201ENST00000399429 RPIAP49247 311 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 ARHGDIBP52566 201 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 STC1P52823 247 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 CAMK1Q14012 370 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 GRIN2CQ14957 1233 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 PRSS36Q5K4E3 855 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 HIST2H2AA3Q6FI13 130 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 C17orf107Q6ZR85 190 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 LHFPL3Q86UP9 236 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 CFAP206Q8IYR0 622 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 PM20D2Q8IYS1 436 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 ZNF548Q8NEK5 533 aaPredicted RBP9□□□□□ -0.97
COL28A1-201ENST00000399429 OR8K5Q8NH50 307 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 DNAJB8Q8NHS0 232 aa9□□□□□ -0.97
COL28A1-201ENST00000399429 PUM2Q8TB72 1066 aaKnown RBP eCLIP9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms