RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 MCCD1P59942 119 aaPredicted RBP13.28□□□□□ -0.28
COL4A1-201ENST00000375820 FPGSQ05932 587 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 ECH1Q13011 328 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 CDK10Q15131 360 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 DPYSL2Q16555 572 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 CAMKVQ8NCB2 501 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 FANK1Q8TC84 345 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 ZNF431Q8TF32 576 aaPredicted RBP13.28□□□□□ -0.28
COL4A1-201ENST00000375820 B3GAT2Q9NPZ5 323 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 ZNF701Q9NV72 531 aaPredicted RBP13.28□□□□□ -0.28
COL4A1-201ENST00000375820 INPPL1O15357 1258 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 HEXBP07686 556 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 RBM34P42696 430 aaKnown RBP13.28□□□□□ -0.28
COL4A1-201ENST00000375820 SLC26A5P58743 744 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 ZNF267Q14586 743 aaPredicted RBP13.28□□□□□ -0.28
COL4A1-201ENST00000375820 DECR1Q16698 335 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 TICAM1Q8IUC6 712 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 NAT8LQ8N9F0 302 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 TFGQ92734 400 aaPredicted RBP13.28□□□□□ -0.28
COL4A1-201ENST00000375820 FCRL5Q96RD9 977 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 ASPNQ9BXN1 380 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 POFUT2Q9Y2G5 429 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 GP1BBP13224 206 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 TYRP14679 529 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 PPP1R3AQ16821 1122 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 ZNF517Q6ZMY9 492 aaPredicted RBP13.28□□□□□ -0.28
COL4A1-201ENST00000375820 C15orf52Q6ZUT6 534 aaKnown RBP13.28□□□□□ -0.28
COL4A1-201ENST00000375820 OR5T1Q8NG75 326 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 RFT1Q96AA3 541 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 SLC22A18Q96BI1 424 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 HAPLN3Q96S86 360 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 TRIM36Q9NQ86 728 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 CMAHPQ9Y471 501 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 SCO2O43819 266 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 DLX3O60479 287 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 HOXB2P14652 356 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 GNRHRP30968 328 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 WDR4P57081 412 aaKnown RBP13.28□□□□□ -0.28
COL4A1-201ENST00000375820 MYLK3Q32MK0 819 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 SPANXN4Q5MJ08 99 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 ADGRF1Q5T601 910 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 SHKBP1Q8TBC3 707 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 PYURFQ96I23 114 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 SOX17Q9H6I2 414 aaPredicted RBP13.28□□□□□ -0.28
COL4A1-201ENST00000375820 Q9N2J8 555 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 THUMPD1Q9NXG2 353 aaKnown RBP13.28□□□□□ -0.28
COL4A1-201ENST00000375820 HTR3EA5X5Y0 456 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 GADD45AP24522 165 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 VSX2P58304 361 aaPredicted RBP13.28□□□□□ -0.28
COL4A1-201ENST00000375820 HNRNPA0Q13151 305 aaKnown RBP13.28□□□□□ -0.28
COL4A1-201ENST00000375820 PTCHD3Q3KNS1 767 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 TCEANCQ8N8B7 351 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 NLGN4YQ8NFZ3 816 aaPredicted RBP13.28□□□□□ -0.28
COL4A1-201ENST00000375820 TTLQ8NG68 377 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 FCGR1BQ92637 280 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 HDAC2Q92769 488 aaKnown RBP13.28□□□□□ -0.28
COL4A1-201ENST00000375820 CD180Q99467 661 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 SIX2Q9NPC8 291 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 XPNPEP1Q9NQW7 623 aa13.28□□□□□ -0.28
COL4A1-201ENST00000375820 EIF2B3Q9NR50 452 aaKnown RBP13.28□□□□□ -0.28
COL4A1-201ENST00000375820 A0A0D9SEW6 157 aa13.27□□□□□ -0.28
COL4A1-201ENST00000375820 HMGN1P05114 100 aa13.27□□□□□ -0.28
COL4A1-201ENST00000375820 HERV-K104P61576 105 aa13.27□□□□□ -0.28
COL4A1-201ENST00000375820 ZDHHC24Q6UX98 284 aa13.27□□□□□ -0.28
COL4A1-201ENST00000375820 SAMD14Q8IZD0 417 aaPredicted RBP13.27□□□□□ -0.28
COL4A1-201ENST00000375820 BTBD1Q9H0C5 482 aa13.27□□□□□ -0.28
COL4A1-201ENST00000375820 MS4A12Q9NXJ0 267 aa13.27□□□□□ -0.28
COL4A1-201ENST00000375820 UBE2UQ5VVX9 321 aa13.27□□□□□ -0.28
COL4A1-201ENST00000375820 CCDC116Q8IYX3 515 aa13.27□□□□□ -0.28
COL4A1-201ENST00000375820 GATAD2BQ8WXI9 593 aa13.27□□□□□ -0.28
COL4A1-201ENST00000375820 SMARCD2Q92925 531 aa13.27□□□□□ -0.28
COL4A1-201ENST00000375820 ST14Q9Y5Y6 855 aa13.27□□□□□ -0.28
COL4A1-201ENST00000375820 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 A0A1B0GVI7 797 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 FAM227AF5H4B4 570 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 TNFSF12O43508 249 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 PVALBP20472 110 aaPredicted RBP13.27□□□□□ -0.29
COL4A1-201ENST00000375820 PON3Q15166 354 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 SGCAQ16586 387 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 MSS51Q4VC12 460 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 ZSCAN4Q8NAM6 433 aaPredicted RBP13.27□□□□□ -0.29
COL4A1-201ENST00000375820 OR51G2Q8NGK0 314 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 MMABQ96EY8 250 aaPredicted RBP13.27□□□□□ -0.29
COL4A1-201ENST00000375820 NSUN3Q9H649 340 aaKnown RBP13.27□□□□□ -0.29
COL4A1-201ENST00000375820 PCDHGA6Q9Y5G7 932 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 TBX10O75333 385 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 MAP2K4P45985 399 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 FKBP1BP68106 108 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 PTP4A2Q12974 167 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 COMTD1Q86VU5 262 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 ZNF283Q8N7M2 679 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 STOML3Q8TAV4 291 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 MINDY3Q9H8M7 445 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 PEX12O00623 359 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 CNTN5O94779 1100 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 BCKDHAP12694 445 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 NAA10P41227 235 aaPredicted RBP13.27□□□□□ -0.29
COL4A1-201ENST00000375820 GSK3BP49841 420 aa13.27□□□□□ -0.29
COL4A1-201ENST00000375820 TLE2Q04725 743 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms