RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 KDM4BO94953 1096 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 ARPC4P59998 168 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 DHCR24Q15392 516 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 TMIGD1Q6UXZ0 262 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 RANBP3LQ86VV4 465 aaPredicted RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 CAMKVQ8NCB2 501 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 NIFKQ9BYG3 293 aaKnown RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 C1orf109Q9NX04 203 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 PCDHGB3Q9Y5G1 929 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 PCDHGA11Q9Y5H2 935 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 PBRM1Q86U86 1689 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 TRAV6A0A075B6T7 132 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 DBHP09172 617 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 CD70P32970 193 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 BLMHQ13867 455 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 HNRNPDQ14103 355 aaKnown RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 E2F2Q14209 437 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 SLC35G1Q2M3R5 365 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 SPANXN4Q5MJ08 99 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 DEPDC4Q8N2C3 294 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 CREB3L4Q8TEY5 395 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 TRAPPC9Q96Q05 1148 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 WDR45Q9Y484 360 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 PIAS3Q9Y6X2 628 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 PSMD7P51665 324 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 OCLNQ16625 522 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 IFI44LQ53G44 452 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF845Q96IR2 970 aaPredicted RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 LMF1Q96S06 567 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 TMEM51Q9NW97 253 aa7.11□□□□□ -1.27
VPS13A-202ENST00000357409 CUEDC1Q9NWM3 386 aaPredicted RBP7.11□□□□□ -1.27
VPS13A-202ENST00000357409 MYO5CQ9NQX4 1742 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 A0A1W2PQ72 361 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 ABLIM1O14639 778 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 SYNGR4O95473 234 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 CEBPBP17676 345 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 GGT2P36268 569 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 POU3F4P49335 361 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 ITGA1P56199 1179 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 ADAM8P78325 824 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF776Q68DI1 518 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 TMPRSS11AQ6ZMR5 421 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 COMTD1Q86VU5 262 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 SRFBP1Q8NEF9 429 aaKnown RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 NUP43Q8NFH3 380 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 OR10G2Q8NGC3 310 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 ZDHHC1Q8WTX9 485 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 DEFB126Q9BYW3 111 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 SLC32A1Q9H598 525 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 PISDQ9UG56 409 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 SGK494L7N484 410 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 STSP08842 583 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 HOXC6P09630 235 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 GNAZP19086 355 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 FXYD4P59646 89 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 AAK1Q2M2I8 961 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 FLYWCH1Q4VC44 716 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 PRAMEF17Q5VTA0 474 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 SLX4IPQ5VYV7 408 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 SDR16C5Q8N3Y7 309 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 AQP11Q8NBQ7 271 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 OR51G2Q8NGK0 314 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 ZBED6CLQ96FA7 236 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 RNF32Q9H0A6 362 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 BATF3Q9NR55 127 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 ADAMTS13Q76LX8 1427 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 SFTPBP07988 381 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 SERPINA6P08185 405 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 CD40LGP29965 261 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 HOXC5Q00444 222 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 MEA1Q16626 185 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 EGFLAMQ63HQ2 1017 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 NCEH1Q6PIU2 408 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 ZYG11AQ6WRX3 759 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 GALNT12Q8IXK2 581 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 CLECL1Q8IZS7 167 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 KRTCAP2Q8N6L1 136 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 AENQ8WTP8 325 aaKnown RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 NSMCE3Q96MG7 304 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 STRADBQ9C0K7 418 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 FZD8Q9H461 694 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 SPATA7Q9P0W8 599 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 FAM234BA2RU67 622 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 ALADP13716 330 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 HCAR3P49019 387 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 MECP2P51608 486 aaKnown RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 SLC44A1Q8WWI5 657 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 ERMAPQ96PL5 475 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 OR2S2Q9NQN1 319 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 FARSBQ9NSD9 589 aaKnown RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 A0A0A6YYC8 382 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 I3L1I5 382 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 SRCP12931 536 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 GP1BBP13224 206 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 MAGEA3P43357 314 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 TSTQ16762 297 aaKnown RBP7.1□□□□□ -1.27
VPS13A-202ENST00000357409 PSAPL1Q6NUJ1 521 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 CFAP77Q6ZQR2 320 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 RNF130Q86XS8 419 aa7.1□□□□□ -1.27
VPS13A-202ENST00000357409 ZNF100Q8IYN0 542 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms