RNA–Protein interactions for RNA: YNR007C

ATG3, Transcript of E2-like enzyme, yeast

Gene ATG3, Length 933 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ATG3	YNR007C	PBP1	P53297	722 aa	Known RBP	4.65	□□□□□ -1.67
ATG3	YNR007C	ATG13	Q06628	738 aa		4.65	□□□□□ -1.67
ATG3	YNR007C	RXT3	Q07458	294 aa		4.65	□□□□□ -1.67
ATG3	YNR007C	YPK9	Q12697	1472 aa		4.64	□□□□□ -1.67
ATG3	YNR007C	APL1	P27351	700 aa		4.64	□□□□□ -1.67
ATG3	YNR007C	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.64	□□□□□ -1.67	not detected
ATG3	YNR007C	SPR28	Q04921	423 aa		4.64	□□□□□ -1.67
ATG3	YNR007C	ESF1	Q06344	628 aa	Known RBP	4.64	□□□□□ -1.67
ATG3	YNR007C	ACK1	Q07622	623 aa	Predicted RBP	4.64	□□□□□ -1.67
ATG3	YNR007C	RIB2	Q12362	591 aa	Known RBP	4.64	□□□□□ -1.67
ATG3	YNR007C	UFD4	P33202	1483 aa		4.63	□□□□□ -1.67
ATG3	YNR007C	BAS1	P22035	811 aa		4.63	□□□□□ -1.67
ATG3	YNR007C	CDC20	P26309	610 aa		4.63	□□□□□ -1.67
ATG3	YNR007C	RER2	P35196	286 aa		4.63	□□□□□ -1.67
ATG3	YNR007C	SIZ1	Q04195	904 aa		4.63	□□□□□ -1.67
ATG3	YNR007C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.63	□□□□□ -1.67	not detected
ATG3	YNR007C	GPB1	Q08886	897 aa		4.63	□□□□□ -1.67
ATG3	YNR007C	RTT10	Q08924	1013 aa		4.63	□□□□□ -1.67
ATG3	YNR007C	FYV10	P40492	516 aa		4.62	□□□□□ -1.67
ATG3	YNR007C	TIF35	Q04067	274 aa	Known RBP	4.62	□□□□□ -1.67
ATG3	YNR007C	RRP15	Q06511	250 aa	Predicted RBP	4.62	□□□□□ -1.67
ATG3	YNR007C	TMA46	Q12000	345 aa	Known RBP	4.62	□□□□□ -1.67
ATG3	YNR007C	GNT1	Q12096	491 aa		4.62	□□□□□ -1.67
ATG3	YNR007C	CDC6	P09119	513 aa		4.61	□□□□□ -1.67
ATG3	YNR007C	ACE2	P21192	770 aa		4.61	□□□□□ -1.67
ATG3	YNR007C	STE11	P23561	717 aa		4.61	□□□□□ -1.67
ATG3	YNR007C	HEM3	P28789	327 aa		4.61	□□□□□ -1.67
ATG3	YNR007C	UGA2	P38067	497 aa		4.61	□□□□□ -1.67
ATG3	YNR007C	MCM7	P38132	845 aa		4.61	□□□□□ -1.67
ATG3	YNR007C	ACM1	Q08981	209 aa		4.61	□□□□□ -1.67
ATG3	YNR007C	RPL11A	P0C0W9	174 aa	Known RBP	4.6	□□□□□ -1.67
ATG3	YNR007C	PEP7	P32609	515 aa		4.6	□□□□□ -1.67
ATG3	YNR007C	TRM2	P33753	639 aa		4.6	□□□□□ -1.67
ATG3	YNR007C	LST4	P34239	828 aa		4.6	□□□□□ -1.67
ATG3	YNR007C	GEM1	P39722	662 aa		4.6	□□□□□ -1.67
ATG3	YNR007C	MXR1	P40029	184 aa		4.6	□□□□□ -1.67
ATG3	YNR007C	RRT14	P40470	206 aa		4.6	□□□□□ -1.67
ATG3	YNR007C	MNN10	P50108	393 aa	Known RBP	4.6	□□□□□ -1.67
ATG3	YNR007C	RMD1	Q03441	430 aa		4.6	□□□□□ -1.67
ATG3	YNR007C	MSC2	Q03455	724 aa		4.6	□□□□□ -1.67
ATG3	YNR007C	PNS1	Q12412	539 aa		4.6	□□□□□ -1.67
ATG3	YNR007C	RPL11B	Q3E757	174 aa	Predicted RBP	4.6	□□□□□ -1.67
ATG3	YNR007C	THS1	P04801	734 aa	Known RBP	4.59	□□□□□ -1.67
ATG3	YNR007C	VPS62	P53285	467 aa		4.59	□□□□□ -1.67
ATG3	YNR007C	SCC2	Q04002	1493 aa		4.59	□□□□□ -1.67
ATG3	YNR007C	PDR15	Q04182	1529 aa	Known RBP	4.59	□□□□□ -1.67
ATG3	YNR007C	CHD1	P32657	1468 aa		4.58	□□□□□ -1.68
ATG3	YNR007C	DBP2	P24783	546 aa	Known RBP	4.58	□□□□□ -1.68
ATG3	YNR007C	HCM1	P25364	564 aa		4.58	□□□□□ -1.68
ATG3	YNR007C	ASF1	P32447	279 aa		4.58	□□□□□ -1.68
ATG3	YNR007C	PNT1	P38969	423 aa		4.58	□□□□□ -1.68
ATG3	YNR007C	MCM6	P53091	1017 aa	Known RBP	4.58	□□□□□ -1.68
ATG3	YNR007C	GTF1	P53260	183 aa	Predicted RBP	4.58	□□□□□ -1.68
ATG3	YNR007C	YML020W	Q03722	664 aa		4.58	□□□□□ -1.68
ATG3	YNR007C	TMA10	Q06177	86 aa		4.58	□□□□□ -1.68
ATG3	YNR007C	BI4	P03879	638 aa		4.57	□□□□□ -1.68
ATG3	YNR007C	SLA2	P33338	968 aa		4.57	□□□□□ -1.68
ATG3	YNR007C	YAP6	Q03935	383 aa		4.57	□□□□□ -1.68
ATG3	YNR007C	YLR224W	Q05947	369 aa		4.57	□□□□□ -1.68
ATG3	YNR007C	SPP382	Q06411	708 aa	Predicted RBP	4.57	□□□□□ -1.68
ATG3	YNR007C	URN1	Q06525	465 aa	Known RBP	4.57	□□□□□ -1.68
ATG3	YNR007C	NOP12	Q08208	459 aa	Known RBP	4.57	□□□□□ -1.68
ATG3	YNR007C	NOP8	Q08287	484 aa	Predicted RBP	4.57	□□□□□ -1.68
ATG3	YNR007C	HMI1	Q12039	706 aa		4.57	□□□□□ -1.68
ATG3	YNR007C	PUS9	Q12069	462 aa		4.57	□□□□□ -1.68
ATG3	YNR007C	NTE1	Q04958	1679 aa		4.57	□□□□□ -1.68
ATG3	YNR007C	RKR1	Q04781	1562 aa		4.57	□□□□□ -1.68
ATG3	YNR007C	EMC1	P25574	760 aa		4.56	□□□□□ -1.68
ATG3	YNR007C	LYP1	P32487	611 aa		4.56	□□□□□ -1.68
ATG3	YNR007C	TOP2	P06786	1428 aa	Known RBP	4.55	□□□□□ -1.68
ATG3	YNR007C	DRS2	P39524	1355 aa		4.55	□□□□□ -1.68
ATG3	YNR007C	TRP2	P00899	507 aa	Known RBP	4.55	□□□□□ -1.68
ATG3	YNR007C	DUT1	P33317	147 aa		4.55	□□□□□ -1.68
ATG3	YNR007C	MSE1	P48525	536 aa		4.55	□□□□□ -1.68
ATG3	YNR007C	GCV2	P49095	1034 aa		4.55	□□□□□ -1.68
ATG3	YNR007C	HFM1	P51979	1187 aa		4.55	□□□□□ -1.68
ATG3	YNR007C	NTO1	Q12311	748 aa		4.55	□□□□□ -1.68
ATG3	YNR007C	PAN1	P32521	1480 aa		4.55	□□□□□ -1.68
ATG3	YNR007C	CDC34	P14682	295 aa		4.54	□□□□□ -1.68
ATG3	YNR007C	PMI40	P29952	429 aa	Known RBP	4.54	□□□□□ -1.68
ATG3	YNR007C	MND2	P40577	368 aa		4.54	□□□□□ -1.68
ATG3	YNR007C	TYW3	P53177	273 aa		4.54	□□□□□ -1.68
ATG3	YNR007C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.54	□□□□□ -1.68	not detected
ATG3	YNR007C	RKM4	Q12504	494 aa		4.54	□□□□□ -1.68
ATG3	YNR007C	PET112	P33893	541 aa		4.53	□□□□□ -1.68
ATG3	YNR007C	EEB1	Q02891	456 aa		4.53	□□□□□ -1.68
ATG3	YNR007C	OYE2	Q03558	400 aa	Known RBP	4.53	□□□□□ -1.68
ATG3	YNR007C	GIS1	Q03833	894 aa		4.53	□□□□□ -1.68
ATG3	YNR007C	TPO1	Q07824	586 aa		4.53	□□□□□ -1.68
ATG3	YNR007C	TRM732	Q03496	1420 aa		4.53	□□□□□ -1.68
ATG3	YNR007C	PMA1	P05030	918 aa	Known RBP	4.52	□□□□□ -1.69
ATG3	YNR007C	INO1	P11986	533 aa		4.52	□□□□□ -1.69
ATG3	YNR007C	DCG1	P32460	244 aa		4.52	□□□□□ -1.69
ATG3	YNR007C	POA1	P38218	177 aa		4.52	□□□□□ -1.69
ATG3	YNR007C	MET10	P39692	1035 aa		4.52	□□□□□ -1.69
ATG3	YNR007C	ZRG8	P40021	1076 aa		4.52	□□□□□ -1.69
ATG3	YNR007C	MET12	P46151	657 aa		4.52	□□□□□ -1.69
ATG3	YNR007C	MTC3	P53077	123 aa		4.52	□□□□□ -1.69
ATG3	YNR007C	YPL066W	Q12194	479 aa		4.52	□□□□□ -1.69
ATG3	YNR007C	RPP2A	P05319	106 aa	Known RBP	4.51	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms