RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 NAALADL2Q58DX5 795 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 AS3MTQ9HBK9 375 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 ANO2Q9NQ90 1003 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 GNL3LQ9NVN8 582 aaKnown RBP4.17□□□□□ -1.74
SCN1A-221ENST00000641996 CAVIN2O95810 425 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 TMCO3Q6UWJ1 677 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 EXOC1Q9NV70 894 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 RRP15Q9Y3B9 282 aaKnown RBP4.17□□□□□ -1.74
SCN1A-221ENST00000641996 SASH1O94885 1247 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 TPP2P29144 1249 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-221ENST00000641996 CCDC191Q8NCU4 936 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 CENPHQ9H3R5 247 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 STK25O00506 426 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 SLC26A4O43511 780 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 KRT20P35900 424 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 RNF20Q5VTR2 975 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 PROSER2Q86WR7 435 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-221ENST00000641996 FAM81BQ96LP2 452 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 TFIP11Q9UBB9 837 aaKnown RBP4.17□□□□□ -1.74
SCN1A-221ENST00000641996 DNAJA1P31689 397 aaKnown RBP4.17□□□□□ -1.74
SCN1A-221ENST00000641996 CCDC184Q52MB2 194 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 ANO1Q5XXA6 986 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 KCNA2P16389 499 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 NMIQ13287 307 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-221ENST00000641996 E2F4Q16254 413 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 ZSCAN30Q86W11 494 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 CRACR2AQ9BSW2 395 aa4.17□□□□□ -1.74
SCN1A-221ENST00000641996 CLASRPQ8N2M8 674 aaKnown RBP4.16□□□□□ -1.74
SCN1A-221ENST00000641996 RABGAP1Q9Y3P9 1069 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 A0A1B0GUL7 405 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 HIP1RO75146 1068 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 HSPA4P34932 840 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 NBPF8Q3BBV2 869 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 MAATS1Q7Z4T9 603 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 KIAA1328Q86T90 577 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 PPFIBP1Q86W92 1011 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 SMAD5Q99717 465 aaKnown RBP4.16□□□□□ -1.74
SCN1A-221ENST00000641996 EVA1CP58658 441 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 MAP1BP46821 2468 aaKnown RBP4.16□□□□□ -1.74
SCN1A-221ENST00000641996 HPDP32754 393 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-221ENST00000641996 SKIV2LQ15477 1246 aaKnown RBP4.16□□□□□ -1.74
SCN1A-221ENST00000641996 C21orf62-AS1Q17RA5 79 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 CD248Q9HCU0 757 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 BSDC1Q9NW68 430 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-221ENST00000641996 PHF8Q9UPP1 1060 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 ARID1BQ8NFD5 2236 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-221ENST00000641996 KRT10P13645 584 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 NACA2Q9H009 215 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 SCHIP1Q9P0W5 487 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-221ENST00000641996 MYL1P05976 194 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 MRPL28Q13084 256 aaKnown RBP4.16□□□□□ -1.74
SCN1A-221ENST00000641996 LRRC23Q53EV4 343 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-221ENST00000641996 N4BP2L2Q92802 583 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-221ENST00000641996 BICD1Q96G01 975 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 TMOD1P28289 359 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 NUMA1Q14980 2115 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 PPFIA4O75335 1185 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 RHOXF2BP0C7M4 288 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 DESP17661 470 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 CNGA1P29973 690 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 SMC1AQ14683 1233 aaKnown RBP4.16□□□□□ -1.74
SCN1A-221ENST00000641996 NFKBIBQ15653 356 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 SYCP2LQ5T4T6 812 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 TRIM74Q86UV6 250 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 TRIM73Q86UV7 250 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 NME8Q8N427 588 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 RHOXF2Q9BQY4 288 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 SPATS2LQ9NUQ6 558 aaKnown RBP4.16□□□□□ -1.74
SCN1A-221ENST00000641996 VCAM1P19320 739 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 TRIM68Q6AZZ1 485 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 TEKT1Q969V4 418 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 DIAPH3Q9NSV4 1193 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 GJA8P48165 433 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 ZBTB17Q13105 803 aa4.16□□□□□ -1.74
SCN1A-221ENST00000641996 DYNC1I1O14576 645 aa4.15□□□□□ -1.74
SCN1A-221ENST00000641996 RPSAP08865 295 aaKnown RBP4.15□□□□□ -1.74
SCN1A-221ENST00000641996 NAA25Q14CX7 972 aa4.15□□□□□ -1.74
SCN1A-221ENST00000641996 ZNF394Q53GI3 561 aa4.15□□□□□ -1.74
SCN1A-221ENST00000641996 CDCA7Q9BWT1 371 aaPredicted RBP4.15□□□□□ -1.74
SCN1A-221ENST00000641996 IFT57Q9NWB7 429 aa4.15□□□□□ -1.74
SCN1A-221ENST00000641996 GOLGA6L4A6NEF3 574 aa4.15□□□□□ -1.74
SCN1A-221ENST00000641996 DUSP27Q5VZP5 1158 aa4.15□□□□□ -1.74
SCN1A-221ENST00000641996 SCLT1Q96NL6 688 aa4.15□□□□□ -1.74
SCN1A-221ENST00000641996 SRRTQ9BXP5 876 aaKnown RBP4.15□□□□□ -1.74
SCN1A-221ENST00000641996 SLKQ9H2G2 1235 aaPredicted RBP4.15□□□□□ -1.74
SCN1A-221ENST00000641996 MMP14P50281 582 aa4.15□□□□□ -1.74
SCN1A-221ENST00000641996 PSMC1P62191 440 aaKnown RBP4.15□□□□□ -1.74
SCN1A-221ENST00000641996 SYCP1Q15431 976 aa4.15□□□□□ -1.74
SCN1A-221ENST00000641996 TCF3P15923 654 aa4.15□□□□□ -1.74
SCN1A-221ENST00000641996 OAS2P29728 719 aaKnown RBP4.15□□□□□ -1.74
SCN1A-221ENST00000641996 SLC4A3P48751 1232 aa4.15□□□□□ -1.74
SCN1A-221ENST00000641996 MCM2P49736 904 aa4.15□□□□□ -1.74
SCN1A-221ENST00000641996 GYS2P54840 703 aa4.15□□□□□ -1.74
SCN1A-221ENST00000641996 DNAJC14Q6Y2X3 702 aaPredicted RBP4.15□□□□□ -1.74
SCN1A-221ENST00000641996 NEK1Q96PY6 1258 aa4.15□□□□□ -1.74
SCN1A-221ENST00000641996 RWDD1Q9H446 243 aaPredicted RBP4.15□□□□□ -1.74
SCN1A-221ENST00000641996 EVPLQ92817 2033 aa4.15□□□□□ -1.74
SCN1A-221ENST00000641996 PPP1R12AO14974 1030 aaPredicted RBP4.15□□□□□ -1.74
SCN1A-221ENST00000641996 FAM9CQ8IZT9 166 aa4.15□□□□□ -1.74
SCN1A-221ENST00000641996 KIF22Q14807 665 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms