RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SH3BGRP55822 239 aaPredicted RBP3.22□□□□□ -1.89
SCN1A-219ENST00000641575 FILIP1LQ4L180 1135 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 PDCL2Q8N4E4 241 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 ROCK2O75116 1388 aaKnown RBP3.22□□□□□ -1.89
SCN1A-219ENST00000641575 PDE6BP35913 854 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 APBA1Q02410 837 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 ODR4Q5SWX8 454 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 PTPRQQ9UMZ3 2332 aa3.22□□□□□ -1.89
SCN1A-219ENST00000641575 ZBTB33Q86T24 672 aa3.21□□□□□ -1.89
SCN1A-219ENST00000641575 SMARCE1Q969G3 411 aa3.21□□□□□ -1.89
SCN1A-219ENST00000641575 CARD11Q9BXL7 1154 aa3.21□□□□□ -1.89
SCN1A-219ENST00000641575 C9orf78Q9NZ63 289 aaPredicted RBP3.21□□□□□ -1.89
SCN1A-219ENST00000641575 CCDC27Q2M243 656 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 SOGA3Q5TF21 947 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 C1orf228Q6PIY5 440 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 MICAL1Q8TDZ2 1067 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 USP26Q9BXU7 913 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 NACAP1Q9BZK3 213 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 KIF7Q2M1P5 1343 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 MINK1Q8N4C8 1332 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-219ENST00000641575 M0QZ92 97 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC57Q2TAC2 916 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 RNF187Q5TA31 235 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-219ENST00000641575 ZSCAN16Q9H4T2 348 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-219ENST00000641575 P3H3Q8IVL6 736 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 CFAP45Q9UL16 551 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 CCNB3Q8WWL7 1395 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 CCER2I3L3R5 266 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 PRKCQQ04759 706 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 FMNL3Q8IVF7 1028 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 GSDMBQ8TAX9 411 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC94Q9BW85 323 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-219ENST00000641575 CHD5Q8TDI0 1954 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 NDC80O14777 642 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 KIF11P52732 1056 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 TERF1P54274 439 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 RNF168Q8IYW5 571 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-219ENST00000641575 TMC2Q8TDI7 906 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 TSPY26PQ9H489 355 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 ZHX3Q9H4I2 956 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 FAM8A1Q9UBU6 413 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 STARD3NLO95772 234 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 WDR78Q5VTH9 848 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 CENPSQ8N2Z9 138 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 MYH4Q9Y623 1939 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 ABCA2Q9BZC7 2435 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 ACTN2P35609 894 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC73Q6ZRK6 1079 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 RAB3IPQ96QF0 476 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-219ENST00000641575 HIRIP3Q9BW71 556 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-219ENST00000641575 CEP126Q9P2H0 1117 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.21□□□□□ -1.9
SCN1A-219ENST00000641575 MAP9Q49MG5 647 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 ALS2CR12Q96Q35 445 aa3.21□□□□□ -1.9
SCN1A-219ENST00000641575 ZNF165P49910 485 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 PABPC4Q13310 644 aaKnown RBP eCLIP3.2□□□□□ -1.9
SCN1A-219ENST00000641575 CUL4BQ13620 913 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 LDHAL6AQ6ZMR3 332 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 USP48Q86UV5 1035 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 PRPF38AQ8NAV1 312 aaKnown RBP3.2□□□□□ -1.9
SCN1A-219ENST00000641575 PLVAPQ9BX97 442 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 IVNS1ABPQ9Y6Y0 642 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 HIP1O00291 1037 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 KRT18P05783 430 aaKnown RBP3.2□□□□□ -1.9
SCN1A-219ENST00000641575 LIG1P18858 919 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC158Q5M9N0 1113 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 NOL3O60936 208 aaKnown RBP3.2□□□□□ -1.9
SCN1A-219ENST00000641575 EIF2S2P20042 333 aaKnown RBP3.2□□□□□ -1.9
SCN1A-219ENST00000641575 ZNF76P36508 570 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 BAG6P46379 1132 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 GNAI1P63096 354 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 ST5P78524 1137 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 STIM1Q13586 685 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 CABP5Q9NP86 173 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 PNMA2Q9UL42 364 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 ZKSCAN5Q9Y2L8 839 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 CNOT1A5YKK6 2376 aaKnown RBP3.2□□□□□ -1.9
SCN1A-219ENST00000641575 INTS3Q68E01 1043 aaKnown RBP3.2□□□□□ -1.9
SCN1A-219ENST00000641575 MSANTD4Q8NCY6 345 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 NBPF3Q9H094 633 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 ZRANB1Q9UGI0 708 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 ERC2O15083 957 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 FLIIQ13045 1269 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 CAVIN4Q5BKX8 364 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 MBIPQ9NS73 344 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 DACH1Q9UI36 760 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 MED12Q93074 2177 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 NBPF26B4DH59 902 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 SOX12O15370 315 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 PIP4K2BP78356 416 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 TAF11Q15544 211 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 COG3Q96JB2 828 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 GOLGA3Q08378 1498 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC196A0A1B0GTZ2 297 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 TYW5A2RUC4 315 aaKnown RBP3.2□□□□□ -1.9
SCN1A-219ENST00000641575 HDAC4P56524 1084 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 CCDC6Q16204 474 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 JAKMIP3Q5VZ66 844 aa3.2□□□□□ -1.9
SCN1A-219ENST00000641575 SAMD1Q6SPF0 538 aaPredicted RBP3.2□□□□□ -1.9
SCN1A-219ENST00000641575 DDX42Q86XP3 938 aaKnown RBP eCLIP3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms