RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 C5P01031 1676 aa25.64■■□□□ 1.7
UPF3A-211ENST00000618700 FANCIQ9NVI1 1328 aa25.63■■□□□ 1.69
UPF3A-211ENST00000618700 ITPK1Q13572 414 aa25.63■■□□□ 1.69
UPF3A-211ENST00000618700 TSR2Q969E8 191 aaKnown RBP25.63■■□□□ 1.69
UPF3A-211ENST00000618700 E9PSI1 815 aa25.62■■□□□ 1.69
UPF3A-211ENST00000618700 ATP6V1AP38606 617 aa25.62■■□□□ 1.69
UPF3A-211ENST00000618700 KCNQ4P56696 695 aa25.62■■□□□ 1.69
UPF3A-211ENST00000618700 MYH16Q9H6N6 1097 aa25.62■■□□□ 1.69
UPF3A-211ENST00000618700 LAMB4A4D0S4 1761 aa25.61■■□□□ 1.69
UPF3A-211ENST00000618700 SLFN5Q08AF3 891 aa25.61■■□□□ 1.69
UPF3A-211ENST00000618700 CDCA7LQ96GN5 454 aa25.6■■□□□ 1.69
UPF3A-211ENST00000618700 GIGYF1O75420 1035 aaPredicted RBP25.59■■□□□ 1.69
UPF3A-211ENST00000618700 KRT24Q2M2I5 525 aa25.59■■□□□ 1.69
UPF3A-211ENST00000618700 DNAJC10Q8IXB1 793 aa25.59■■□□□ 1.69
UPF3A-211ENST00000618700 TRMT2AQ8IZ69 625 aaKnown RBP25.59■■□□□ 1.69
UPF3A-211ENST00000618700 C4BP0C0L5 1744 aa25.59■■□□□ 1.69
UPF3A-211ENST00000618700 SNRPA1P09661 255 aaKnown RBP25.58■■□□□ 1.69
UPF3A-211ENST00000618700 LINC00116Q8NCU8 138 aa25.58■■□□□ 1.69
UPF3A-211ENST00000618700 PRAMEF22A3QJZ6 481 aa25.57■■□□□ 1.68
UPF3A-211ENST00000618700 TEX13AQ9BXU3 409 aaPredicted RBP25.56■■□□□ 1.68
UPF3A-211ENST00000618700 CYP19A1P11511 503 aaPredicted RBP25.55■■□□□ 1.68
UPF3A-211ENST00000618700 CNTNAP4Q9C0A0 1308 aa25.55■■□□□ 1.68
UPF3A-211ENST00000618700 HOXB7P09629 217 aa25.54■■□□□ 1.68
UPF3A-211ENST00000618700 HMGB2P26583 209 aaKnown RBP25.54■■□□□ 1.68
UPF3A-211ENST00000618700 DUSP27Q5VZP5 1158 aa25.54■■□□□ 1.68
UPF3A-211ENST00000618700 C8orf58Q8NAV2 365 aa25.54■■□□□ 1.68
UPF3A-211ENST00000618700 ANO8Q9HCE9 1232 aaPredicted RBP25.54■■□□□ 1.68
UPF3A-211ENST00000618700 MYH14Q7Z406 1995 aaKnown RBP25.53■■□□□ 1.68
UPF3A-211ENST00000618700 YTHDC1Q96MU7 727 aaKnown RBP25.53■■□□□ 1.68
UPF3A-211ENST00000618700 USP16Q9Y5T5 823 aa25.53■■□□□ 1.68
UPF3A-211ENST00000618700 SOS1Q07889 1333 aaPredicted RBP25.53■■□□□ 1.68
UPF3A-211ENST00000618700 STARD3NLO95772 234 aa25.52■■□□□ 1.68
UPF3A-211ENST00000618700 CRKLP46109 303 aaKnown RBP25.52■■□□□ 1.68
UPF3A-211ENST00000618700 AKT1S1Q96B36 256 aa25.52■■□□□ 1.68
UPF3A-211ENST00000618700 EXOSC9Q06265 439 aaKnown RBP25.51■■□□□ 1.67
UPF3A-211ENST00000618700 ZNF827Q17R98 1081 aa25.51■■□□□ 1.67
UPF3A-211ENST00000618700 RC3H1Q5TC82 1133 aaKnown RBP25.51■■□□□ 1.67
UPF3A-211ENST00000618700 TSPYL6Q8N831 410 aa25.51■■□□□ 1.67
UPF3A-211ENST00000618700 UBR3Q6ZT12 1888 aa25.49■■□□□ 1.67
UPF3A-211ENST00000618700 TUBGCP6Q96RT7 1819 aa25.49■■□□□ 1.67
UPF3A-211ENST00000618700 INTS5Q6P9B9 1019 aaKnown RBP25.49■■□□□ 1.67
UPF3A-211ENST00000618700 CCDC87Q9NVE4 849 aa25.49■■□□□ 1.67
UPF3A-211ENST00000618700 TWISTNBQ3B726 338 aaPredicted RBP25.48■■□□□ 1.67
UPF3A-211ENST00000618700 QSER1Q2KHR3 1735 aa25.48■■□□□ 1.67
UPF3A-211ENST00000618700 ELL2O00472 640 aaPredicted RBP25.47■■□□□ 1.67
UPF3A-211ENST00000618700 AK7Q96M32 723 aa25.47■■□□□ 1.67
UPF3A-211ENST00000618700 ZBTB1Q9Y2K1 713 aa25.47■■□□□ 1.67
UPF3A-211ENST00000618700 ERBB4Q15303 1308 aa25.46■■□□□ 1.67
UPF3A-211ENST00000618700 STK32BQ9NY57 414 aa25.46■■□□□ 1.67
UPF3A-211ENST00000618700 A1BGP04217 495 aa25.45■■□□□ 1.66
UPF3A-211ENST00000618700 SLC15A2Q16348 729 aa25.45■■□□□ 1.66
UPF3A-211ENST00000618700 HDGFL1Q5TGJ6 251 aa25.45■■□□□ 1.66
UPF3A-211ENST00000618700 GNPATO15228 680 aa25.44■■□□□ 1.66
UPF3A-211ENST00000618700 VAMP4O75379 141 aa25.44■■□□□ 1.66
UPF3A-211ENST00000618700 EIF2S2P20042 333 aaKnown RBP25.44■■□□□ 1.66
UPF3A-211ENST00000618700 NBPF14Q5TI25 921 aa25.44■■□□□ 1.66
UPF3A-211ENST00000618700 AMIGO3Q86WK7 504 aa25.44■■□□□ 1.66
UPF3A-211ENST00000618700 PSDA5PKW4 1024 aaPredicted RBP25.43■■□□□ 1.66
UPF3A-211ENST00000618700 NBPF26B4DH59 902 aa25.43■■□□□ 1.66
UPF3A-211ENST00000618700 RPS6KA4O75676 772 aa25.43■■□□□ 1.66
UPF3A-211ENST00000618700 NBPF10Q6P3W6 841 aaKnown RBP25.43■■□□□ 1.66
UPF3A-211ENST00000618700 NBPF15Q8N660 670 aa25.43■■□□□ 1.66
UPF3A-211ENST00000618700 SSFA2P28290 1259 aa25.41■■□□□ 1.66
UPF3A-211ENST00000618700 R3HDM1Q15032 1099 aaKnown RBP25.41■■□□□ 1.66
UPF3A-211ENST00000618700 PDIA6Q15084 440 aa25.41■■□□□ 1.66
UPF3A-211ENST00000618700 NECTIN2Q92692 538 aa25.41■■□□□ 1.66
UPF3A-211ENST00000618700 RTCBQ9Y3I0 505 aaKnown RBP25.41■■□□□ 1.66
UPF3A-211ENST00000618700 LRP5O75197 1615 aa25.41■■□□□ 1.66
UPF3A-211ENST00000618700 CANXP27824 592 aaKnown RBP25.4■■□□□ 1.66
UPF3A-211ENST00000618700 IL6STP40189 918 aaPredicted RBP25.4■■□□□ 1.66
UPF3A-211ENST00000618700 PIP4K2AP48426 406 aaPredicted RBP25.4■■□□□ 1.66
UPF3A-211ENST00000618700 EIF5P55010 431 aaKnown RBP25.4■■□□□ 1.66
UPF3A-211ENST00000618700 CCDC30Q5VVM6 783 aa25.4■■□□□ 1.66
UPF3A-211ENST00000618700 LRP10Q7Z4F1 713 aa25.4■■□□□ 1.66
UPF3A-211ENST00000618700 CHMP4AQ9BY43 222 aa25.4■■□□□ 1.66
UPF3A-211ENST00000618700 TFCP2L1Q9NZI6 479 aa25.4■■□□□ 1.66
UPF3A-211ENST00000618700 PNPLA7Q6ZV29 1317 aa25.39■■□□□ 1.66
UPF3A-211ENST00000618700 CT47B1P0C2W7 299 aaPredicted RBP25.39■■□□□ 1.66
UPF3A-211ENST00000618700 CHPF2Q9P2E5 772 aa25.39■■□□□ 1.66
UPF3A-211ENST00000618700 C4AP0C0L4 1744 aa25.39■■□□□ 1.65
UPF3A-211ENST00000618700 COL15A1P39059 1388 aa25.39■■□□□ 1.65
UPF3A-211ENST00000618700 PROSER3Q2NL68 480 aa25.38■■□□□ 1.65
UPF3A-211ENST00000618700 SMIM5Q71RC9 77 aa25.38■■□□□ 1.65
UPF3A-211ENST00000618700 DDX21Q9NR30 783 aaKnown RBP eCLIP25.38■■□□□ 1.65
UPF3A-211ENST00000618700 DBF4Q9UBU7 674 aaPredicted RBP25.38■■□□□ 1.65
UPF3A-211ENST00000618700 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.37■■□□□ 1.65
UPF3A-211ENST00000618700 CASZ1Q86V15 1759 aa25.36■■□□□ 1.65
UPF3A-211ENST00000618700 PHF14O94880 888 aa25.36■■□□□ 1.65
UPF3A-211ENST00000618700 ZNF428Q96B54 188 aa25.36■■□□□ 1.65
UPF3A-211ENST00000618700 ANXA1P04083 346 aa25.35■■□□□ 1.65
UPF3A-211ENST00000618700 MYL6BP14649 208 aa25.35■■□□□ 1.65
UPF3A-211ENST00000618700 FLAD1Q8NFF5 587 aa25.35■■□□□ 1.65
UPF3A-211ENST00000618700 ARHGEF1Q92888 912 aaKnown RBP25.34■■□□□ 1.65
UPF3A-211ENST00000618700 SCN7AQ01118 1682 aa25.33■■□□□ 1.65
UPF3A-211ENST00000618700 TRAPPC3LQ5T215 181 aa25.33■■□□□ 1.65
UPF3A-211ENST00000618700 COL23A1Q86Y22 540 aaPredicted RBP25.33■■□□□ 1.65
UPF3A-211ENST00000618700 STK31Q9BXU1 1019 aa25.33■■□□□ 1.65
UPF3A-211ENST00000618700 BCORQ6W2J9 1755 aa25.32■■□□□ 1.64
UPF3A-211ENST00000618700 TCERG1O14776 1098 aaKnown RBP25.32■■□□□ 1.64
UPF3A-211ENST00000618700 HYPKQ9NX55 129 aa25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms