RNA–Protein interactions for RNA: ENST00000614931.1

PCDH9-205, Transcript of protocadherin 9, humanhuman

TSL 1 (best)

Gene PCDH9, Length 461 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-205ENST00000614931 FLAD1Q8NFF5 587 aa10.43□□□□□ -0.74
PCDH9-205ENST00000614931 TSPYL4Q9UJ04 414 aa10.43□□□□□ -0.74
PCDH9-205ENST00000614931 ZNF831Q5JPB2 1677 aa10.43□□□□□ -0.74
PCDH9-205ENST00000614931 CACNA1FO60840 1977 aa10.43□□□□□ -0.74
PCDH9-205ENST00000614931 TJP1Q07157 1748 aa10.42□□□□□ -0.74
PCDH9-205ENST00000614931 SLC39A6Q13433 755 aa10.42□□□□□ -0.74
PCDH9-205ENST00000614931 NFATC2IPQ8NCF5 419 aa10.42□□□□□ -0.74
PCDH9-205ENST00000614931 UBR3Q6ZT12 1888 aa10.42□□□□□ -0.74
PCDH9-205ENST00000614931 DCAF8L1A6NGE4 600 aa10.41□□□□□ -0.74
PCDH9-205ENST00000614931 BTBD11A6QL63 1104 aa10.41□□□□□ -0.74
PCDH9-205ENST00000614931 MSH5O43196 834 aa10.41□□□□□ -0.74
PCDH9-205ENST00000614931 POLD1P28340 1107 aa10.41□□□□□ -0.74
PCDH9-205ENST00000614931 ITPK1Q13572 414 aa10.41□□□□□ -0.74
PCDH9-205ENST00000614931 AMIGO3Q86WK7 504 aa10.41□□□□□ -0.74
PCDH9-205ENST00000614931 LINC00116Q8NCU8 138 aa10.41□□□□□ -0.74
PCDH9-205ENST00000614931 BABAM1Q9NWV8 329 aa10.41□□□□□ -0.74
PCDH9-205ENST00000614931 HEG1Q9ULI3 1381 aa10.4□□□□□ -0.74
PCDH9-205ENST00000614931 ELL2O00472 640 aaPredicted RBP10.4□□□□□ -0.74
PCDH9-205ENST00000614931 ATP6V1AP38606 617 aa10.4□□□□□ -0.74
PCDH9-205ENST00000614931 CABP4P57796 275 aa10.4□□□□□ -0.74
PCDH9-205ENST00000614931 EIF4A1P60842 406 aaKnown RBP10.4□□□□□ -0.74
PCDH9-205ENST00000614931 AK7Q96M32 723 aa10.4□□□□□ -0.74
PCDH9-205ENST00000614931 SLC4A9Q96Q91 983 aa10.4□□□□□ -0.74
PCDH9-205ENST00000614931 CICQ96RK0 1608 aaPredicted RBP10.4□□□□□ -0.75
PCDH9-205ENST00000614931 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.39□□□□□ -0.75
PCDH9-205ENST00000614931 VAMP4O75379 141 aa10.39□□□□□ -0.75
PCDH9-205ENST00000614931 SSFA2P28290 1259 aa10.39□□□□□ -0.75
PCDH9-205ENST00000614931 RCAN3Q9UKA8 241 aa10.39□□□□□ -0.75
PCDH9-205ENST00000614931 COL5A3P25940 1745 aaPredicted RBP10.38□□□□□ -0.75
PCDH9-205ENST00000614931 PRAMEF22A3QJZ6 481 aa10.38□□□□□ -0.75
PCDH9-205ENST00000614931 BCAR3O75815 825 aa10.38□□□□□ -0.75
PCDH9-205ENST00000614931 RARSP54136 660 aaKnown RBP10.38□□□□□ -0.75
PCDH9-205ENST00000614931 TWISTNBQ3B726 338 aaPredicted RBP10.38□□□□□ -0.75
PCDH9-205ENST00000614931 ZNF790Q6PG37 636 aa10.38□□□□□ -0.75
PCDH9-205ENST00000614931 SMIM5Q71RC9 77 aa10.38□□□□□ -0.75
PCDH9-205ENST00000614931 ZNF496Q96IT1 587 aaPredicted RBP10.38□□□□□ -0.75
PCDH9-205ENST00000614931 SUPT16HQ9Y5B9 1047 aaKnown RBP10.38□□□□□ -0.75
PCDH9-205ENST00000614931 RNF123Q5XPI4 1314 aa10.37□□□□□ -0.75
PCDH9-205ENST00000614931 TCERG1O14776 1098 aaKnown RBP10.37□□□□□ -0.75
PCDH9-205ENST00000614931 GNPATO15228 680 aa10.37□□□□□ -0.75
PCDH9-205ENST00000614931 PHF14O94880 888 aa10.37□□□□□ -0.75
PCDH9-205ENST00000614931 RC3H1Q5TC82 1133 aaKnown RBP10.37□□□□□ -0.75
PCDH9-205ENST00000614931 MSL1Q68DK7 614 aa10.37□□□□□ -0.75
PCDH9-205ENST00000614931 RBM42Q9BTD8 480 aaKnown RBP10.37□□□□□ -0.75
PCDH9-205ENST00000614931 BCL2L13Q9BXK5 485 aa10.37□□□□□ -0.75
PCDH9-205ENST00000614931 MYH14Q7Z406 1995 aaKnown RBP10.37□□□□□ -0.75
PCDH9-205ENST00000614931 CT47B1P0C2W7 299 aaPredicted RBP10.36□□□□□ -0.75
PCDH9-205ENST00000614931 YY1P25490 414 aa10.36□□□□□ -0.75
PCDH9-205ENST00000614931 SSH1Q8WYL5 1049 aa10.36□□□□□ -0.75
PCDH9-205ENST00000614931 N4BP2Q86UW6 1770 aaPredicted RBP10.36□□□□□ -0.75
PCDH9-205ENST00000614931 CNTNAP4Q9C0A0 1308 aa10.35□□□□□ -0.75
PCDH9-205ENST00000614931 PTCD1O75127 700 aaKnown RBP10.35□□□□□ -0.75
PCDH9-205ENST00000614931 GIGYF1O75420 1035 aaPredicted RBP10.35□□□□□ -0.75
PCDH9-205ENST00000614931 KLHL34Q8N239 644 aa10.35□□□□□ -0.75
PCDH9-205ENST00000614931 NLGN2Q8NFZ4 835 aa10.35□□□□□ -0.75
PCDH9-205ENST00000614931 TNNQ9UQP3 1299 aa10.35□□□□□ -0.75
PCDH9-205ENST00000614931 PLIN1O60240 522 aa10.34□□□□□ -0.75
PCDH9-205ENST00000614931 RPS6KA4O75676 772 aa10.34□□□□□ -0.75
PCDH9-205ENST00000614931 ADRA2BP18089 450 aa10.34□□□□□ -0.75
PCDH9-205ENST00000614931 RRP1P56182 461 aaKnown RBP10.34□□□□□ -0.75
PCDH9-205ENST00000614931 TRAPPC3LQ5T215 181 aa10.34□□□□□ -0.75
PCDH9-205ENST00000614931 TTC5Q8N0Z6 440 aa10.34□□□□□ -0.75
PCDH9-205ENST00000614931 MRPL50Q8N5N7 158 aaKnown RBP10.34□□□□□ -0.75
PCDH9-205ENST00000614931 NECTIN2Q92692 538 aa10.34□□□□□ -0.75
PCDH9-205ENST00000614931 RTCBQ9Y3I0 505 aaKnown RBP10.34□□□□□ -0.75
PCDH9-205ENST00000614931 CD2APQ9Y5K6 639 aa10.34□□□□□ -0.75
PCDH9-205ENST00000614931 HOXB7P09629 217 aa10.33□□□□□ -0.76
PCDH9-205ENST00000614931 GPR162Q16538 588 aa10.33□□□□□ -0.76
PCDH9-205ENST00000614931 ALDH1L2Q3SY69 923 aa10.33□□□□□ -0.76
PCDH9-205ENST00000614931 ARHGEF1Q92888 912 aaKnown RBP10.33□□□□□ -0.76
PCDH9-205ENST00000614931 FMNL2Q96PY5 1086 aa10.33□□□□□ -0.76
PCDH9-205ENST00000614931 SMC4Q9NTJ3 1288 aa10.33□□□□□ -0.76
PCDH9-205ENST00000614931 SOS1Q07889 1333 aaPredicted RBP10.33□□□□□ -0.76
PCDH9-205ENST00000614931 ANXA1P04083 346 aa10.32□□□□□ -0.76
PCDH9-205ENST00000614931 CRKLP46109 303 aaKnown RBP10.32□□□□□ -0.76
PCDH9-205ENST00000614931 IRX6P78412 446 aaPredicted RBP10.32□□□□□ -0.76
PCDH9-205ENST00000614931 PROSER3Q2NL68 480 aa10.32□□□□□ -0.76
PCDH9-205ENST00000614931 G2E3Q7L622 706 aa10.32□□□□□ -0.76
PCDH9-205ENST00000614931 USP16Q9Y5T5 823 aa10.32□□□□□ -0.76
PCDH9-205ENST00000614931 ARFGEF2Q9Y6D5 1785 aa10.31□□□□□ -0.76
PCDH9-205ENST00000614931 CHD4Q14839 1912 aa10.31□□□□□ -0.76
PCDH9-205ENST00000614931 C4AP0C0L4 1744 aa10.31□□□□□ -0.76
PCDH9-205ENST00000614931 SNRPA1P09661 255 aaKnown RBP10.31□□□□□ -0.76
PCDH9-205ENST00000614931 EIF2S2P20042 333 aaKnown RBP10.31□□□□□ -0.76
PCDH9-205ENST00000614931 BRPF1P55201 1214 aaPredicted RBP10.31□□□□□ -0.76
PCDH9-205ENST00000614931 PDIA6Q15084 440 aa10.31□□□□□ -0.76
PCDH9-205ENST00000614931 C20orf194Q5TEA3 1177 aa10.31□□□□□ -0.76
PCDH9-205ENST00000614931 HDGFL1Q5TGJ6 251 aa10.31□□□□□ -0.76
PCDH9-205ENST00000614931 INTS5Q6P9B9 1019 aaKnown RBP10.31□□□□□ -0.76
PCDH9-205ENST00000614931 DNAJC10Q8IXB1 793 aa10.31□□□□□ -0.76
PCDH9-205ENST00000614931 NLGN1Q8N2Q7 840 aa10.31□□□□□ -0.76
PCDH9-205ENST00000614931 ZNF428Q96B54 188 aa10.31□□□□□ -0.76
PCDH9-205ENST00000614931 MMP10P09238 476 aa10.3□□□□□ -0.76
PCDH9-205ENST00000614931 CYP19A1P11511 503 aaPredicted RBP10.3□□□□□ -0.76
PCDH9-205ENST00000614931 GYS1P13807 737 aa10.3□□□□□ -0.76
PCDH9-205ENST00000614931 YBX3P16989 372 aaKnown RBP eCLIP10.3□□□□□ -0.76
PCDH9-205ENST00000614931 RFC4P35249 363 aa10.3□□□□□ -0.76
PCDH9-205ENST00000614931 PIP4K2AP48426 406 aaPredicted RBP10.3□□□□□ -0.76
PCDH9-205ENST00000614931 VSIG10Q8N0Z9 540 aa10.3□□□□□ -0.76
PCDH9-205ENST00000614931 CHPF2Q9P2E5 772 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms