RNA–Protein interactions for RNA: ENST00000613547.4

MDC1-209, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 5 BASIC

Gene MDC1, Length 830 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-209ENST00000613547 TJP1Q07157 1748 aa17.21■□□□□ 0.35
MDC1-209ENST00000613547 PNPLA7Q6ZV29 1317 aa17.21■□□□□ 0.34
MDC1-209ENST00000613547 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.2■□□□□ 0.34
MDC1-209ENST00000613547 ADRA2BP18089 450 aa17.2■□□□□ 0.34
MDC1-209ENST00000613547 USP16Q9Y5T5 823 aa17.2■□□□□ 0.34
MDC1-209ENST00000613547 TRAPPC3LQ5T215 181 aa17.19■□□□□ 0.34
MDC1-209ENST00000613547 INTS5Q6P9B9 1019 aaKnown RBP17.19■□□□□ 0.34
MDC1-209ENST00000613547 CHMP4AQ9BY43 222 aa17.19■□□□□ 0.34
MDC1-209ENST00000613547 TAF1LQ8IZX4 1826 aa17.19■□□□□ 0.34
MDC1-209ENST00000613547 PRAMEF22A3QJZ6 481 aa17.18■□□□□ 0.34
MDC1-209ENST00000613547 HOXB7P09629 217 aa17.18■□□□□ 0.34
MDC1-209ENST00000613547 CANXP27824 592 aaKnown RBP17.18■□□□□ 0.34
MDC1-209ENST00000613547 HNRNPUQ00839 825 aaKnown RBP eCLIP17.18■□□□□ 0.34
MDC1-209ENST00000613547 GOLGA2Q08379 1002 aa17.18■□□□□ 0.34
MDC1-209ENST00000613547 SLC16A10Q8TF71 515 aa17.18■□□□□ 0.34
MDC1-209ENST00000613547 ZBTB1Q9Y2K1 713 aa17.18■□□□□ 0.34
MDC1-209ENST00000613547 COL5A3P25940 1745 aaPredicted RBP17.18■□□□□ 0.34
MDC1-209ENST00000613547 ZNF521Q96K83 1311 aa17.18■□□□□ 0.34
MDC1-209ENST00000613547 COL23A1Q86Y22 540 aaPredicted RBP17.17■□□□□ 0.34
MDC1-209ENST00000613547 TSR2Q969E8 191 aaKnown RBP17.17■□□□□ 0.34
MDC1-209ENST00000613547 A0A087WZG4 1122 aa17.16■□□□□ 0.34
MDC1-209ENST00000613547 A1BGP04217 495 aa17.16■□□□□ 0.34
MDC1-209ENST00000613547 RFC4P35249 363 aa17.16■□□□□ 0.34
MDC1-209ENST00000613547 IL6STP40189 918 aaPredicted RBP17.16■□□□□ 0.34
MDC1-209ENST00000613547 DUSP27Q5VZP5 1158 aa17.16■□□□□ 0.34
MDC1-209ENST00000613547 ZNF330Q9Y3S2 320 aaPredicted RBP17.16■□□□□ 0.34
MDC1-209ENST00000613547 SOS1Q07889 1333 aaPredicted RBP17.16■□□□□ 0.34
MDC1-209ENST00000613547 ERBB4Q15303 1308 aa17.16■□□□□ 0.34
MDC1-209ENST00000613547 FANCIQ9NVI1 1328 aa17.16■□□□□ 0.34
MDC1-209ENST00000613547 E9PSI1 815 aa17.15■□□□□ 0.34
MDC1-209ENST00000613547 EIF2S2P20042 333 aaKnown RBP17.15■□□□□ 0.34
MDC1-209ENST00000613547 COL15A1P39059 1388 aa17.15■□□□□ 0.34
MDC1-209ENST00000613547 KRT24Q2M2I5 525 aa17.14■□□□□ 0.33
MDC1-209ENST00000613547 HDGFL1Q5TGJ6 251 aa17.14■□□□□ 0.33
MDC1-209ENST00000613547 AMIGO3Q86WK7 504 aa17.14■□□□□ 0.33
MDC1-209ENST00000613547 ARHGEF1Q92888 912 aaKnown RBP17.14■□□□□ 0.33
MDC1-209ENST00000613547 MTFR1LQ9H019 292 aa17.14■□□□□ 0.33
MDC1-209ENST00000613547 SPON1Q9HCB6 807 aa17.14■□□□□ 0.33
MDC1-209ENST00000613547 ELL2O00472 640 aaPredicted RBP17.13■□□□□ 0.33
MDC1-209ENST00000613547 EIF5P55010 431 aaKnown RBP17.13■□□□□ 0.33
MDC1-209ENST00000613547 PDGFDQ9GZP0 370 aaPredicted RBP17.13■□□□□ 0.33
MDC1-209ENST00000613547 QSER1Q2KHR3 1735 aa17.13■□□□□ 0.33
MDC1-209ENST00000613547 ZPR1O75312 459 aa17.12■□□□□ 0.33
MDC1-209ENST00000613547 ZBTB7AO95365 584 aa17.12■□□□□ 0.33
MDC1-209ENST00000613547 SMIM5Q71RC9 77 aa17.12■□□□□ 0.33
MDC1-209ENST00000613547 C8orf58Q8NAV2 365 aa17.12■□□□□ 0.33
MDC1-209ENST00000613547 LAMB4A4D0S4 1761 aa17.12■□□□□ 0.33
MDC1-209ENST00000613547 PIP4K2AP48426 406 aaPredicted RBP17.11■□□□□ 0.33
MDC1-209ENST00000613547 TWISTNBQ3B726 338 aaPredicted RBP17.11■□□□□ 0.33
MDC1-209ENST00000613547 NECTIN2Q92692 538 aa17.11■□□□□ 0.33
MDC1-209ENST00000613547 ARXQ96QS3 562 aa17.11■□□□□ 0.33
MDC1-209ENST00000613547 SPINK5Q9NQ38 1064 aaPredicted RBP17.11■□□□□ 0.33
MDC1-209ENST00000613547 UBR3Q6ZT12 1888 aa17.11■□□□□ 0.33
MDC1-209ENST00000613547 NBPF26B4DH59 902 aa17.1■□□□□ 0.33
MDC1-209ENST00000613547 MYL6BP14649 208 aa17.1■□□□□ 0.33
MDC1-209ENST00000613547 POLD1P28340 1107 aa17.1■□□□□ 0.33
MDC1-209ENST00000613547 EXOSC9Q06265 439 aaKnown RBP17.1■□□□□ 0.33
MDC1-209ENST00000613547 SLFN5Q08AF3 891 aa17.1■□□□□ 0.33
MDC1-209ENST00000613547 NBPF10Q6P3W6 841 aaKnown RBP17.1■□□□□ 0.33
MDC1-209ENST00000613547 DZIP3Q86Y13 1208 aaKnown RBP17.1■□□□□ 0.33
MDC1-209ENST00000613547 NLGN1Q8N2Q7 840 aa17.1■□□□□ 0.33
MDC1-209ENST00000613547 NBPF15Q8N660 670 aa17.1■□□□□ 0.33
MDC1-209ENST00000613547 DBF4Q9UBU7 674 aaPredicted RBP17.1■□□□□ 0.33
MDC1-209ENST00000613547 USP42Q9H9J4 1324 aaKnown RBP17.1■□□□□ 0.33
MDC1-209ENST00000613547 CASZ1Q86V15 1759 aa17.1■□□□□ 0.33
MDC1-209ENST00000613547 CCDC30Q5VVM6 783 aa17.09■□□□□ 0.33
MDC1-209ENST00000613547 DDX21Q9NR30 783 aaKnown RBP eCLIP17.09■□□□□ 0.33
MDC1-209ENST00000613547 NARFQ9UHQ1 456 aa17.09■□□□□ 0.33
MDC1-209ENST00000613547 ATF5Q9Y2D1 282 aaPredicted RBP17.09■□□□□ 0.33
MDC1-209ENST00000613547 ZBED9Q6R2W3 1325 aa17.09■□□□□ 0.33
MDC1-209ENST00000613547 TUBGCP6Q96RT7 1819 aa17.09■□□□□ 0.33
MDC1-209ENST00000613547 MYH14Q7Z406 1995 aaKnown RBP17.08■□□□□ 0.33
MDC1-209ENST00000613547 MSL1Q68DK7 614 aa17.08■□□□□ 0.32
MDC1-209ENST00000613547 TSPYL6Q8N831 410 aa17.08■□□□□ 0.32
MDC1-209ENST00000613547 STK31Q9BXU1 1019 aa17.08■□□□□ 0.32
MDC1-209ENST00000613547 GYS1P13807 737 aa17.07■□□□□ 0.32
MDC1-209ENST00000613547 USPL1Q5W0Q7 1092 aa17.07■□□□□ 0.32
MDC1-209ENST00000613547 KIF6Q6ZMV9 814 aa17.07■□□□□ 0.32
MDC1-209ENST00000613547 CDCA7LQ96GN5 454 aa17.07■□□□□ 0.32
MDC1-209ENST00000613547 HYPKQ9NX55 129 aa17.07■□□□□ 0.32
MDC1-209ENST00000613547 CHPF2Q9P2E5 772 aa17.07■□□□□ 0.32
MDC1-209ENST00000613547 SRP68Q9UHB9 627 aaKnown RBP17.07■□□□□ 0.32
MDC1-209ENST00000613547 TBC1D2BQ9UPU7 963 aa17.07■□□□□ 0.32
MDC1-209ENST00000613547 ZNF652Q9Y2D9 606 aa17.07■□□□□ 0.32
MDC1-209ENST00000613547 PDIA6Q15084 440 aa17.06■□□□□ 0.32
MDC1-209ENST00000613547 RGL2O15211 777 aa17.05■□□□□ 0.32
MDC1-209ENST00000613547 PPP1R1BQ9UD71 204 aaPredicted RBP17.05■□□□□ 0.32
MDC1-209ENST00000613547 ANXA1P04083 346 aa17.04■□□□□ 0.32
MDC1-209ENST00000613547 PROSER3Q2NL68 480 aa17.04■□□□□ 0.32
MDC1-209ENST00000613547 VAMP4O75379 141 aa17.03■□□□□ 0.32
MDC1-209ENST00000613547 CAMTA2O94983 1202 aa17.03■□□□□ 0.32
MDC1-209ENST00000613547 PTGER2P43116 358 aa17.03■□□□□ 0.32
MDC1-209ENST00000613547 FKBP8Q14318 412 aa17.03■□□□□ 0.32
MDC1-209ENST00000613547 CLEC4GQ6UXB4 293 aa17.03■□□□□ 0.32
MDC1-209ENST00000613547 TRMT2AQ8IZ69 625 aaKnown RBP17.03■□□□□ 0.32
MDC1-209ENST00000613547 C4AP0C0L4 1744 aa17.03■□□□□ 0.32
MDC1-209ENST00000613547 MAP3K15Q6ZN16 1313 aa17.02■□□□□ 0.32
MDC1-209ENST00000613547 ERVV-1B6SEH8 477 aa17.02■□□□□ 0.32
MDC1-209ENST00000613547 MMP10P09238 476 aa17.02■□□□□ 0.32
MDC1-209ENST00000613547 CT47B1P0C2W7 299 aaPredicted RBP17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms