RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 CDCA7Q9BWT1 371 aaPredicted RBP8.49□□□□□ -1.05
LINC00540-201ENST00000611481 RRAGCQ9HB90 399 aa8.49□□□□□ -1.05
LINC00540-201ENST00000611481 TARBP1Q13395 1621 aaKnown RBP8.49□□□□□ -1.05
LINC00540-201ENST00000611481 MSX1P28360 303 aa8.48□□□□□ -1.05
LINC00540-201ENST00000611481 UBAP2LQ14157 1087 aaKnown RBP8.48□□□□□ -1.05
LINC00540-201ENST00000611481 C4orf17Q53FE4 359 aa8.48□□□□□ -1.05
LINC00540-201ENST00000611481 C1orf229Q6ZS94 237 aaPredicted RBP8.48□□□□□ -1.05
LINC00540-201ENST00000611481 RUBCNLQ9H714 662 aa8.48□□□□□ -1.05
LINC00540-201ENST00000611481 ATXN7L1Q9ULK2 861 aaPredicted RBP8.48□□□□□ -1.05
LINC00540-201ENST00000611481 KRBA1A5PL33 1030 aa8.47□□□□□ -1.05
LINC00540-201ENST00000611481 K7ELQ4 463 aaPredicted RBP8.47□□□□□ -1.05
LINC00540-201ENST00000611481 BMP4P12644 408 aa8.47□□□□□ -1.05
LINC00540-201ENST00000611481 ABCC10Q5T3U5 1492 aa8.46□□□□□ -1.05
LINC00540-201ENST00000611481 XP32Q5T750 250 aa8.46□□□□□ -1.06
LINC00540-201ENST00000611481 TDRD9Q8NDG6 1382 aaKnown RBP8.46□□□□□ -1.06
LINC00540-201ENST00000611481 AMPD1P23109 780 aa8.45□□□□□ -1.06
LINC00540-201ENST00000611481 BAG6P46379 1132 aa8.45□□□□□ -1.06
LINC00540-201ENST00000611481 USP4Q13107 963 aa8.45□□□□□ -1.06
LINC00540-201ENST00000611481 SLCO4C1Q6ZQN7 724 aa8.45□□□□□ -1.06
LINC00540-201ENST00000611481 RHBDD1Q8TEB9 315 aa8.45□□□□□ -1.06
LINC00540-201ENST00000611481 SNRKQ9NRH2 765 aa8.45□□□□□ -1.06
LINC00540-201ENST00000611481 WIZO95785 1651 aa8.45□□□□□ -1.06
LINC00540-201ENST00000611481 PIK3R2O00459 728 aa8.44□□□□□ -1.06
LINC00540-201ENST00000611481 C2CD2LO14523 706 aa8.44□□□□□ -1.06
LINC00540-201ENST00000611481 FGFR3P22607 806 aa8.44□□□□□ -1.06
LINC00540-201ENST00000611481 COL8A1P27658 744 aa8.44□□□□□ -1.06
LINC00540-201ENST00000611481 PPARGC1BQ86YN6 1023 aaKnown RBP8.44□□□□□ -1.06
LINC00540-201ENST00000611481 ABHD17AQ96GS6 310 aa8.44□□□□□ -1.06
LINC00540-201ENST00000611481 CRISPLD1Q9H336 500 aa8.44□□□□□ -1.06
LINC00540-201ENST00000611481 DOLKQ9UPQ8 538 aa8.44□□□□□ -1.06
LINC00540-201ENST00000611481 NDFIP2Q9NV92 336 aa8.43□□□□□ -1.06
LINC00540-201ENST00000611481 GGA1Q9UJY5 639 aa8.43□□□□□ -1.06
LINC00540-201ENST00000611481 ABCC8Q09428 1581 aa8.43□□□□□ -1.06
LINC00540-201ENST00000611481 SPATA31D1Q6ZQQ2 1576 aa8.43□□□□□ -1.06
LINC00540-201ENST00000611481 TSPOAP1O95153 1857 aa8.43□□□□□ -1.06
LINC00540-201ENST00000611481 BNIP3LO60238 219 aa8.42□□□□□ -1.06
LINC00540-201ENST00000611481 EIF4G2P78344 907 aaKnown RBP eCLIP8.42□□□□□ -1.068e-7■■■■■ 28.7
LINC00540-201ENST00000611481 CTBSQ01459 385 aa8.42□□□□□ -1.06
LINC00540-201ENST00000611481 GRIN2CQ14957 1233 aa8.42□□□□□ -1.06
LINC00540-201ENST00000611481 TLR1Q15399 786 aa8.42□□□□□ -1.06
LINC00540-201ENST00000611481 FIGNL1Q6PIW4 674 aa8.42□□□□□ -1.06
LINC00540-201ENST00000611481 LINC00114Q6XXX2 140 aa8.42□□□□□ -1.06
LINC00540-201ENST00000611481 SIRT1Q96EB6 747 aa8.42□□□□□ -1.06
LINC00540-201ENST00000611481 ETNK1Q9HBU6 452 aa8.42□□□□□ -1.06
LINC00540-201ENST00000611481 MAGI1Q96QZ7 1491 aaPredicted RBP8.42□□□□□ -1.06
LINC00540-201ENST00000611481 DNMBPQ6XZF7 1577 aa8.42□□□□□ -1.06
LINC00540-201ENST00000611481 PRDM2Q13029 1718 aa8.41□□□□□ -1.06
LINC00540-201ENST00000611481 DIP2BQ9P265 1576 aa8.41□□□□□ -1.06
LINC00540-201ENST00000611481 RAD54L2Q9Y4B4 1467 aa8.41□□□□□ -1.06
LINC00540-201ENST00000611481 TSGA10IPQ3SY00 556 aa8.41□□□□□ -1.06
LINC00540-201ENST00000611481 SLFNL1Q499Z3 407 aa8.41□□□□□ -1.06
LINC00540-201ENST00000611481 TBC1D9Q6ZT07 1266 aa8.41□□□□□ -1.06
LINC00540-201ENST00000611481 PHTF2Q8N3S3 785 aa8.41□□□□□ -1.06
LINC00540-201ENST00000611481 GNB5O14775 395 aa8.4□□□□□ -1.06
LINC00540-201ENST00000611481 ARAFP10398 606 aa8.4□□□□□ -1.06
LINC00540-201ENST00000611481 HOXB4P17483 251 aaPredicted RBP8.4□□□□□ -1.06
LINC00540-201ENST00000611481 RNF135Q8IUD6 432 aa8.4□□□□□ -1.06
LINC00540-201ENST00000611481 BTBD6Q96KE9 485 aa8.4□□□□□ -1.06
LINC00540-201ENST00000611481 PRM3Q9NNZ6 103 aa8.4□□□□□ -1.06
LINC00540-201ENST00000611481 POLA1P09884 1462 aaPredicted RBP8.39□□□□□ -1.07
LINC00540-201ENST00000611481 STAU1O95793 577 aaKnown RBP8.39□□□□□ -1.07
LINC00540-201ENST00000611481 FURINP09958 794 aa8.39□□□□□ -1.07
LINC00540-201ENST00000611481 EPXP11678 715 aa8.39□□□□□ -1.07
LINC00540-201ENST00000611481 PLA2G4AP47712 749 aa8.39□□□□□ -1.07
LINC00540-201ENST00000611481 OXLD1Q5BKU9 147 aa8.39□□□□□ -1.07
LINC00540-201ENST00000611481 C1orf216Q8TAB5 229 aa8.39□□□□□ -1.07
LINC00540-201ENST00000611481 SUV39H2Q9H5I1 410 aa8.39□□□□□ -1.07
LINC00540-201ENST00000611481 PCDHGC4Q9Y5F7 938 aa8.39□□□□□ -1.07
LINC00540-201ENST00000611481 NLRP8Q86W28 1048 aa8.38□□□□□ -1.07
LINC00540-201ENST00000611481 ZCCHC2Q9C0B9 1178 aaKnown RBP8.38□□□□□ -1.07
LINC00540-201ENST00000611481 NOP53Q9NZM5 478 aaKnown RBP8.38□□□□□ -1.07
LINC00540-201ENST00000611481 TBC1D2BQ9UPU7 963 aa8.38□□□□□ -1.07
LINC00540-201ENST00000611481 BRPF1P55201 1214 aaPredicted RBP8.37□□□□□ -1.07
LINC00540-201ENST00000611481 NIFKQ9BYG3 293 aaKnown RBP8.37□□□□□ -1.07
LINC00540-201ENST00000611481 DNAAF2Q9NVR5 837 aaKnown RBP8.37□□□□□ -1.07
LINC00540-201ENST00000611481 CHIC2Q9UKJ5 165 aa8.37□□□□□ -1.07
LINC00540-201ENST00000611481 CEP170Q5SW79 1584 aa8.36□□□□□ -1.07
LINC00540-201ENST00000611481 NEURL1BA8MQ27 555 aa8.36□□□□□ -1.07
LINC00540-201ENST00000611481 INHAP05111 366 aa8.36□□□□□ -1.07
LINC00540-201ENST00000611481 DGKGP49619 791 aa8.36□□□□□ -1.07
LINC00540-201ENST00000611481 GDF10P55107 478 aa8.36□□□□□ -1.07
LINC00540-201ENST00000611481 GRIN2BQ13224 1484 aa8.35□□□□□ -1.07
LINC00540-201ENST00000611481 C1QTNF9BB2RNN3 333 aa8.35□□□□□ -1.07
LINC00540-201ENST00000611481 ATXN7O15265 892 aaPredicted RBP8.35□□□□□ -1.07
LINC00540-201ENST00000611481 ATP4AP20648 1035 aa8.35□□□□□ -1.07
LINC00540-201ENST00000611481 SCNN1DP51172 638 aa8.35□□□□□ -1.07
LINC00540-201ENST00000611481 AIDAQ96BJ3 306 aa8.35□□□□□ -1.07
LINC00540-201ENST00000611481 SOGA1O94964 1423 aa8.35□□□□□ -1.07
LINC00540-201ENST00000611481 MAPKBP1O60336 1514 aa8.34□□□□□ -1.07
LINC00540-201ENST00000611481 ADH6P28332 368 aa8.34□□□□□ -1.07
LINC00540-201ENST00000611481 IRF5Q13568 498 aa8.34□□□□□ -1.07
LINC00540-201ENST00000611481 CD163Q86VB7 1156 aa8.34□□□□□ -1.07
LINC00540-201ENST00000611481 SMTNP53814 917 aa8.33□□□□□ -1.08
LINC00540-201ENST00000611481 NBPF1Q3BBV0 1214 aa8.33□□□□□ -1.08
LINC00540-201ENST00000611481 MAP7D1Q3KQU3 841 aa8.33□□□□□ -1.08
LINC00540-201ENST00000611481 ARSJQ5FYB0 599 aaPredicted RBP8.33□□□□□ -1.08
LINC00540-201ENST00000611481 FAM182BQ5T319 152 aa8.33□□□□□ -1.08
LINC00540-201ENST00000611481 CHSY3Q70JA7 882 aa8.33□□□□□ -1.08
LINC00540-201ENST00000611481 Q8N3U1 123 aa8.33□□□□□ -1.08
LINC00540-201ENST00000611481 AVENQ9NQS1 362 aaPredicted RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms