RNA–Protein interactions for RNA: ENST00000606066.1

CTSA-211, Transcript of cathepsin A, humanhuman

TSL 5

Gene CTSA, Length 603 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-211ENST00000606066 KLHL34Q8N239 644 aa18.59■□□□□ 0.57
CTSA-211ENST00000606066 IFT57Q9NWB7 429 aa18.59■□□□□ 0.57
CTSA-211ENST00000606066 SALL2Q9Y467 1007 aaPredicted RBP18.59■□□□□ 0.57
CTSA-211ENST00000606066 SIPA1L3O60292 1781 aaPredicted RBP18.59■□□□□ 0.57
CTSA-211ENST00000606066 VIRMAQ69YN4 1812 aaKnown RBP18.58■□□□□ 0.57
CTSA-211ENST00000606066 ZNF831Q5JPB2 1677 aa18.58■□□□□ 0.57
CTSA-211ENST00000606066 EIF4A1P60842 406 aaKnown RBP18.58■□□□□ 0.56
CTSA-211ENST00000606066 CEP350Q5VT06 3117 aa18.57■□□□□ 0.56
CTSA-211ENST00000606066 GNPATO15228 680 aa18.57■□□□□ 0.56
CTSA-211ENST00000606066 GIGYF1O75420 1035 aaPredicted RBP18.57■□□□□ 0.56
CTSA-211ENST00000606066 CYP19A1P11511 503 aaPredicted RBP18.57■□□□□ 0.56
CTSA-211ENST00000606066 CRKLP46109 303 aaKnown RBP18.57■□□□□ 0.56
CTSA-211ENST00000606066 WDR63Q8IWG1 891 aa18.57■□□□□ 0.56
CTSA-211ENST00000606066 RTCBQ9Y3I0 505 aaKnown RBP18.57■□□□□ 0.56
CTSA-211ENST00000606066 CD2APQ9Y5K6 639 aa18.57■□□□□ 0.56
CTSA-211ENST00000606066 YBX3P16989 372 aaKnown RBP eCLIP18.56■□□□□ 0.56
CTSA-211ENST00000606066 SSFA2P28290 1259 aa18.56■□□□□ 0.56
CTSA-211ENST00000606066 PELP1Q8IZL8 1130 aaKnown RBP18.56■□□□□ 0.56
CTSA-211ENST00000606066 CCDC87Q9NVE4 849 aa18.56■□□□□ 0.56
CTSA-211ENST00000606066 C5P01031 1676 aa18.56■□□□□ 0.56
CTSA-211ENST00000606066 IL16Q14005 1332 aa18.55■□□□□ 0.56
CTSA-211ENST00000606066 MSH5O43196 834 aa18.55■□□□□ 0.56
CTSA-211ENST00000606066 RPS6KA4O75676 772 aa18.55■□□□□ 0.56
CTSA-211ENST00000606066 ZNF853P0CG23 659 aa18.55■□□□□ 0.56
CTSA-211ENST00000606066 C4BP0C0L5 1744 aa18.54■□□□□ 0.56
CTSA-211ENST00000606066 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.54■□□□□ 0.56
CTSA-211ENST00000606066 ADRA2BP18089 450 aa18.54■□□□□ 0.56
CTSA-211ENST00000606066 TRAPPC3LQ5T215 181 aa18.54■□□□□ 0.56
CTSA-211ENST00000606066 INTS5Q6P9B9 1019 aaKnown RBP18.54■□□□□ 0.56
CTSA-211ENST00000606066 UBR2Q8IWV8 1755 aa18.54■□□□□ 0.56
CTSA-211ENST00000606066 PHF14O94880 888 aa18.53■□□□□ 0.56
CTSA-211ENST00000606066 MBIPQ9NS73 344 aa18.53■□□□□ 0.56
CTSA-211ENST00000606066 USP16Q9Y5T5 823 aa18.53■□□□□ 0.56
CTSA-211ENST00000606066 CICQ96RK0 1608 aaPredicted RBP18.52■□□□□ 0.56
CTSA-211ENST00000606066 NPM2Q86SE8 214 aaKnown RBP18.52■□□□□ 0.56
CTSA-211ENST00000606066 PRAMEF22A3QJZ6 481 aa18.51■□□□□ 0.55
CTSA-211ENST00000606066 CANXP27824 592 aaKnown RBP18.51■□□□□ 0.55
CTSA-211ENST00000606066 ZBTB1Q9Y2K1 713 aa18.51■□□□□ 0.55
CTSA-211ENST00000606066 TAF1LQ8IZX4 1826 aa18.51■□□□□ 0.55
CTSA-211ENST00000606066 TJP1Q07157 1748 aa18.5■□□□□ 0.55
CTSA-211ENST00000606066 RFC4P35249 363 aa18.5■□□□□ 0.55
CTSA-211ENST00000606066 KDM3BQ7LBC6 1761 aa18.5■□□□□ 0.55
CTSA-211ENST00000606066 A1BGP04217 495 aa18.49■□□□□ 0.55
CTSA-211ENST00000606066 HOXB7P09629 217 aa18.49■□□□□ 0.55
CTSA-211ENST00000606066 IL6STP40189 918 aaPredicted RBP18.49■□□□□ 0.55
CTSA-211ENST00000606066 MSL1Q68DK7 614 aa18.49■□□□□ 0.55
CTSA-211ENST00000606066 AMIGO3Q86WK7 504 aa18.49■□□□□ 0.55
CTSA-211ENST00000606066 ARHGEF1Q92888 912 aaKnown RBP18.49■□□□□ 0.55
CTSA-211ENST00000606066 MYH16Q9H6N6 1097 aa18.49■□□□□ 0.55
CTSA-211ENST00000606066 COL5A3P25940 1745 aaPredicted RBP18.49■□□□□ 0.55
CTSA-211ENST00000606066 COL24A1Q17RW2 1714 aa18.49■□□□□ 0.55
CTSA-211ENST00000606066 SOS1Q07889 1333 aaPredicted RBP18.49■□□□□ 0.55
CTSA-211ENST00000606066 A0A087WZG4 1122 aa18.48■□□□□ 0.55
CTSA-211ENST00000606066 CHMP4AQ9BY43 222 aa18.48■□□□□ 0.55
CTSA-211ENST00000606066 ZNF521Q96K83 1311 aa18.48■□□□□ 0.55
CTSA-211ENST00000606066 QSER1Q2KHR3 1735 aa18.47■□□□□ 0.55
CTSA-211ENST00000606066 EIF5P55010 431 aaKnown RBP18.47■□□□□ 0.55
CTSA-211ENST00000606066 GOLGA2Q08379 1002 aa18.47■□□□□ 0.55
CTSA-211ENST00000606066 SMIM5Q71RC9 77 aa18.47■□□□□ 0.55
CTSA-211ENST00000606066 ERBB4Q15303 1308 aa18.47■□□□□ 0.55
CTSA-211ENST00000606066 EIF2S2P20042 333 aaKnown RBP18.46■□□□□ 0.55
CTSA-211ENST00000606066 DUSP27Q5VZP5 1158 aa18.46■□□□□ 0.55
CTSA-211ENST00000606066 TSR2Q969E8 191 aaKnown RBP18.46■□□□□ 0.55
CTSA-211ENST00000606066 CHD4Q14839 1912 aa18.46■□□□□ 0.55
CTSA-211ENST00000606066 ZPR1O75312 459 aa18.45■□□□□ 0.54
CTSA-211ENST00000606066 KRT24Q2M2I5 525 aa18.45■□□□□ 0.54
CTSA-211ENST00000606066 ZNF330Q9Y3S2 320 aaPredicted RBP18.45■□□□□ 0.54
CTSA-211ENST00000606066 COL15A1P39059 1388 aa18.44■□□□□ 0.54
CTSA-211ENST00000606066 HDGFL1Q5TGJ6 251 aa18.44■□□□□ 0.54
CTSA-211ENST00000606066 FANCIQ9NVI1 1328 aa18.44■□□□□ 0.54
CTSA-211ENST00000606066 E9PSI1 815 aa18.43■□□□□ 0.54
CTSA-211ENST00000606066 HNRNPUQ00839 825 aaKnown RBP eCLIP18.43■□□□□ 0.54
CTSA-211ENST00000606066 NLGN1Q8N2Q7 840 aa18.43■□□□□ 0.54
CTSA-211ENST00000606066 NARFQ9UHQ1 456 aa18.43■□□□□ 0.54
CTSA-211ENST00000606066 USP42Q9H9J4 1324 aaKnown RBP18.43■□□□□ 0.54
CTSA-211ENST00000606066 UBR3Q6ZT12 1888 aa18.42■□□□□ 0.54
CTSA-211ENST00000606066 NBPF26B4DH59 902 aa18.42■□□□□ 0.54
CTSA-211ENST00000606066 ELL2O00472 640 aaPredicted RBP18.42■□□□□ 0.54
CTSA-211ENST00000606066 NBPF10Q6P3W6 841 aaKnown RBP18.42■□□□□ 0.54
CTSA-211ENST00000606066 NBPF15Q8N660 670 aa18.42■□□□□ 0.54
CTSA-211ENST00000606066 C8orf58Q8NAV2 365 aa18.42■□□□□ 0.54
CTSA-211ENST00000606066 MYL6BP14649 208 aa18.41■□□□□ 0.54
CTSA-211ENST00000606066 PIP4K2AP48426 406 aaPredicted RBP18.41■□□□□ 0.54
CTSA-211ENST00000606066 GPBP1L1Q9HC44 474 aaPredicted RBP18.41■□□□□ 0.54
CTSA-211ENST00000606066 SPINK5Q9NQ38 1064 aaPredicted RBP18.41■□□□□ 0.54
CTSA-211ENST00000606066 ATP10DQ9P241 1426 aa18.4■□□□□ 0.54
CTSA-211ENST00000606066 GYS1P13807 737 aa18.4■□□□□ 0.54
CTSA-211ENST00000606066 TWISTNBQ3B726 338 aaPredicted RBP18.4■□□□□ 0.54
CTSA-211ENST00000606066 USPL1Q5W0Q7 1092 aa18.4■□□□□ 0.54
CTSA-211ENST00000606066 DZIP3Q86Y13 1208 aaKnown RBP18.4■□□□□ 0.54
CTSA-211ENST00000606066 NECTIN2Q92692 538 aa18.4■□□□□ 0.54
CTSA-211ENST00000606066 DDX21Q9NR30 783 aaKnown RBP eCLIP18.4■□□□□ 0.54
CTSA-211ENST00000606066 DBF4Q9UBU7 674 aaPredicted RBP18.4■□□□□ 0.54
CTSA-211ENST00000606066 SRP68Q9UHB9 627 aaKnown RBP18.4■□□□□ 0.54
CTSA-211ENST00000606066 TBC1D2BQ9UPU7 963 aa18.4■□□□□ 0.54
CTSA-211ENST00000606066 MYH14Q7Z406 1995 aaKnown RBP18.4■□□□□ 0.54
CTSA-211ENST00000606066 SLFN5Q08AF3 891 aa18.39■□□□□ 0.53
CTSA-211ENST00000606066 IFFO2Q5TF58 517 aa18.39■□□□□ 0.53
CTSA-211ENST00000606066 CCDC30Q5VVM6 783 aa18.39■□□□□ 0.53
CTSA-211ENST00000606066 TUBGCP6Q96RT7 1819 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms