RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 MSL1Q68DK7 614 aa22.16■■□□□ 1.14
TRIM28-215ENST00000601150 ARXQ96QS3 562 aa22.16■■□□□ 1.14
TRIM28-215ENST00000601150 ARHGEF1Q92888 912 aaKnown RBP22.15■■□□□ 1.14
TRIM28-215ENST00000601150 RFC4P35249 363 aa22.14■■□□□ 1.13
TRIM28-215ENST00000601150 MIS18AQ9NYP9 233 aa22.14■■□□□ 1.13
TRIM28-215ENST00000601150 LAMB4A4D0S4 1761 aa22.13■■□□□ 1.13
TRIM28-215ENST00000601150 SOS1Q07889 1333 aaPredicted RBP22.12■■□□□ 1.13
TRIM28-215ENST00000601150 TRIM35Q9UPQ4 493 aa22.12■■□□□ 1.13
TRIM28-215ENST00000601150 ZBTB1Q9Y2K1 713 aa22.12■■□□□ 1.13
TRIM28-215ENST00000601150 APAF1O14727 1248 aa22.11■■□□□ 1.13
TRIM28-215ENST00000601150 SNRPA1P09661 255 aaKnown RBP22.11■■□□□ 1.13
TRIM28-215ENST00000601150 CANXP27824 592 aaKnown RBP22.09■■□□□ 1.13
TRIM28-215ENST00000601150 FHDC1Q9C0D6 1143 aaPredicted RBP22.09■■□□□ 1.13
TRIM28-215ENST00000601150 BABAM1Q9NWV8 329 aa22.09■■□□□ 1.13
TRIM28-215ENST00000601150 COL15A1P39059 1388 aa22.09■■□□□ 1.13
TRIM28-215ENST00000601150 NLGN1Q8N2Q7 840 aa22.08■■□□□ 1.13
TRIM28-215ENST00000601150 TSPYL4Q9UJ04 414 aa22.08■■□□□ 1.13
TRIM28-215ENST00000601150 USP42Q9H9J4 1324 aaKnown RBP22.07■■□□□ 1.12
TRIM28-215ENST00000601150 PRAMEF22A3QJZ6 481 aa22.07■■□□□ 1.12
TRIM28-215ENST00000601150 GYS1P13807 737 aa22.07■■□□□ 1.12
TRIM28-215ENST00000601150 EIF4A1P60842 406 aaKnown RBP22.07■■□□□ 1.12
TRIM28-215ENST00000601150 USP16Q9Y5T5 823 aa22.07■■□□□ 1.12
TRIM28-215ENST00000601150 A1BGP04217 495 aa22.06■■□□□ 1.12
TRIM28-215ENST00000601150 SRP68Q9UHB9 627 aaKnown RBP22.06■■□□□ 1.12
TRIM28-215ENST00000601150 ZPR1O75312 459 aa22.05■■□□□ 1.12
TRIM28-215ENST00000601150 EIF5P55010 431 aaKnown RBP22.05■■□□□ 1.12
TRIM28-215ENST00000601150 SYT17Q9BSW7 474 aa22.05■■□□□ 1.12
TRIM28-215ENST00000601150 A0A087WZG4 1122 aa22.04■■□□□ 1.12
TRIM28-215ENST00000601150 GIGYF1O75420 1035 aaPredicted RBP22.04■■□□□ 1.12
TRIM28-215ENST00000601150 IL6STP40189 918 aaPredicted RBP22.04■■□□□ 1.12
TRIM28-215ENST00000601150 KLHL34Q8N239 644 aa22.04■■□□□ 1.12
TRIM28-215ENST00000601150 MMP10P09238 476 aa22.03■■□□□ 1.12
TRIM28-215ENST00000601150 NARFQ9UHQ1 456 aa22.03■■□□□ 1.12
TRIM28-215ENST00000601150 LAS1LQ9Y4W2 734 aaKnown RBP22.03■■□□□ 1.12
TRIM28-215ENST00000601150 SCN7AQ01118 1682 aa22.02■■□□□ 1.12
TRIM28-215ENST00000601150 CHL1O00533 1208 aa22.02■■□□□ 1.12
TRIM28-215ENST00000601150 CALD1Q05682 793 aaKnown RBP22.02■■□□□ 1.12
TRIM28-215ENST00000601150 USPL1Q5W0Q7 1092 aa22.02■■□□□ 1.12
TRIM28-215ENST00000601150 NPM2Q86SE8 214 aaKnown RBP22.02■■□□□ 1.12
TRIM28-215ENST00000601150 ZNF330Q9Y3S2 320 aaPredicted RBP22.02■■□□□ 1.12
TRIM28-215ENST00000601150 FKBP8Q14318 412 aa22.01■■□□□ 1.11
TRIM28-215ENST00000601150 BCORQ6W2J9 1755 aa22■■□□□ 1.11
TRIM28-215ENST00000601150 PIP4K2AP48426 406 aaPredicted RBP21.99■■□□□ 1.11
TRIM28-215ENST00000601150 FAM9BQ8IZU0 186 aa21.99■■□□□ 1.11
TRIM28-215ENST00000601150 CFAP44Q96MT7 982 aa21.99■■□□□ 1.11
TRIM28-215ENST00000601150 CD2APQ9Y5K6 639 aa21.99■■□□□ 1.11
TRIM28-215ENST00000601150 KIF13BQ9NQT8 1826 aa21.99■■□□□ 1.11
TRIM28-215ENST00000601150 NBPF26B4DH59 902 aa21.98■■□□□ 1.11
TRIM28-215ENST00000601150 NBPF10Q6P3W6 841 aaKnown RBP21.98■■□□□ 1.11
TRIM28-215ENST00000601150 NBPF15Q8N660 670 aa21.98■■□□□ 1.11
TRIM28-215ENST00000601150 PARP3Q9Y6F1 533 aa21.98■■□□□ 1.11
TRIM28-215ENST00000601150 CCDC27Q2M243 656 aa21.97■■□□□ 1.11
TRIM28-215ENST00000601150 IFT57Q9NWB7 429 aa21.97■■□□□ 1.11
TRIM28-215ENST00000601150 TBC1D2BQ9UPU7 963 aa21.97■■□□□ 1.11
TRIM28-215ENST00000601150 DCAF8L1A6NGE4 600 aa21.96■■□□□ 1.11
TRIM28-215ENST00000601150 ZNF853P0CG23 659 aa21.96■■□□□ 1.11
TRIM28-215ENST00000601150 GNAI1P63096 354 aa21.96■■□□□ 1.11
TRIM28-215ENST00000601150 NCBP3Q53F19 620 aaKnown RBP21.96■■□□□ 1.11
TRIM28-215ENST00000601150 DZIP3Q86Y13 1208 aaKnown RBP21.96■■□□□ 1.11
TRIM28-215ENST00000601150 BCL2L12Q9HB09 334 aa21.96■■□□□ 1.11
TRIM28-215ENST00000601150 AFDNP55196 1824 aaKnown RBP21.95■■□□□ 1.1
TRIM28-215ENST00000601150 SENP3-EIF4A1A0A087X0R7 540 aa21.95■■□□□ 1.1
TRIM28-215ENST00000601150 TM4SF1P30408 202 aa21.95■■□□□ 1.1
TRIM28-215ENST00000601150 NLGN2Q8NFZ4 835 aa21.95■■□□□ 1.1
TRIM28-215ENST00000601150 DDR1Q08345 913 aa21.94■■□□□ 1.1
TRIM28-215ENST00000601150 MBIPQ9NS73 344 aa21.94■■□□□ 1.1
TRIM28-215ENST00000601150 ERBB4Q15303 1308 aa21.94■■□□□ 1.1
TRIM28-215ENST00000601150 CAMTA2O94983 1202 aa21.93■■□□□ 1.1
TRIM28-215ENST00000601150 NFIXQ14938 502 aa21.93■■□□□ 1.1
TRIM28-215ENST00000601150 WWC1Q8IX03 1113 aa21.93■■□□□ 1.1
TRIM28-215ENST00000601150 NRXN2Q9P2S2 1712 aa21.92■■□□□ 1.1
TRIM28-215ENST00000601150 C10orf71Q711Q0 1435 aa21.92■■□□□ 1.1
TRIM28-215ENST00000601150 CCER2I3L3R5 266 aa21.92■■□□□ 1.1
TRIM28-215ENST00000601150 EIF2S2P20042 333 aaKnown RBP21.92■■□□□ 1.1
TRIM28-215ENST00000601150 KRT24Q2M2I5 525 aa21.92■■□□□ 1.1
TRIM28-215ENST00000601150 POLRMTO00411 1230 aaKnown RBP21.91■■□□□ 1.1
TRIM28-215ENST00000601150 DIEXFQ68CQ4 756 aaKnown RBP21.91■■□□□ 1.1
TRIM28-215ENST00000601150 KIAA1551Q9HCM1 1747 aa21.91■■□□□ 1.1
TRIM28-215ENST00000601150 HOXB7P09629 217 aa21.9■■□□□ 1.1
TRIM28-215ENST00000601150 MYL6BP14649 208 aa21.9■■□□□ 1.1
TRIM28-215ENST00000601150 N4BP2Q86UW6 1770 aaPredicted RBP21.89■■□□□ 1.1
TRIM28-215ENST00000601150 TBC1D9BQ66K14 1250 aa21.89■■□□□ 1.09
TRIM28-215ENST00000601150 NGEFQ8N5V2 710 aa21.89■■□□□ 1.09
TRIM28-215ENST00000601150 ZNF652Q9Y2D9 606 aa21.89■■□□□ 1.09
TRIM28-215ENST00000601150 NUP98P52948 1817 aa21.89■■□□□ 1.09
TRIM28-215ENST00000601150 IL16Q14005 1332 aa21.88■■□□□ 1.09
TRIM28-215ENST00000601150 RGL2O15211 777 aa21.88■■□□□ 1.09
TRIM28-215ENST00000601150 CLEC4GQ6UXB4 293 aa21.88■■□□□ 1.09
TRIM28-215ENST00000601150 BICDL1Q6ZP65 573 aa21.88■■□□□ 1.09
TRIM28-215ENST00000601150 SALL2Q9Y467 1007 aaPredicted RBP21.88■■□□□ 1.09
TRIM28-215ENST00000601150 SERPINB2P05120 415 aa21.87■■□□□ 1.09
TRIM28-215ENST00000601150 PDIA6Q15084 440 aa21.87■■□□□ 1.09
TRIM28-215ENST00000601150 DUSP27Q5VZP5 1158 aa21.87■■□□□ 1.09
TRIM28-215ENST00000601150 NECTIN2Q92692 538 aa21.87■■□□□ 1.09
TRIM28-215ENST00000601150 TGFB2P61812 414 aa21.86■■□□□ 1.09
TRIM28-215ENST00000601150 KIF6Q6ZMV9 814 aa21.86■■□□□ 1.09
TRIM28-215ENST00000601150 CARMIL3Q8ND23 1372 aa21.86■■□□□ 1.09
TRIM28-215ENST00000601150 PXDNLA1KZ92 1463 aa21.85■■□□□ 1.09
TRIM28-215ENST00000601150 GPR162Q16538 588 aa21.85■■□□□ 1.09
TRIM28-215ENST00000601150 HDGFL1Q5TGJ6 251 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms