RNA–Protein interactions for RNA: ENST00000597724.6

SSBP4-204, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 865 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-204ENST00000597724 MIS18AQ9NYP9 233 aa22.03■■□□□ 1.12
SSBP4-204ENST00000597724 LMOD3Q0VAK6 560 aa22.02■■□□□ 1.12
SSBP4-204ENST00000597724 NEUROD2Q15784 382 aa22.02■■□□□ 1.12
SSBP4-204ENST00000597724 SYT17Q9BSW7 474 aa22.02■■□□□ 1.12
SSBP4-204ENST00000597724 ZBTB1Q9Y2K1 713 aa22.02■■□□□ 1.12
SSBP4-204ENST00000597724 SOS1Q07889 1333 aaPredicted RBP22.01■■□□□ 1.11
SSBP4-204ENST00000597724 SNRPA1P09661 255 aaKnown RBP22■■□□□ 1.11
SSBP4-204ENST00000597724 GYS1P13807 737 aa22■■□□□ 1.11
SSBP4-204ENST00000597724 C4AP0C0L4 1744 aa22■■□□□ 1.11
SSBP4-204ENST00000597724 NLGN1Q8N2Q7 840 aa21.99■■□□□ 1.11
SSBP4-204ENST00000597724 MRS2Q9HD23 443 aa21.99■■□□□ 1.11
SSBP4-204ENST00000597724 TRIM35Q9UPQ4 493 aa21.99■■□□□ 1.11
SSBP4-204ENST00000597724 KDM3BQ7LBC6 1761 aa21.98■■□□□ 1.11
SSBP4-204ENST00000597724 CANXP27824 592 aaKnown RBP21.98■■□□□ 1.11
SSBP4-204ENST00000597724 USP16Q9Y5T5 823 aa21.98■■□□□ 1.11
SSBP4-204ENST00000597724 USP42Q9H9J4 1324 aaKnown RBP21.98■■□□□ 1.11
SSBP4-204ENST00000597724 PRAMEF22A3QJZ6 481 aa21.97■■□□□ 1.11
SSBP4-204ENST00000597724 SRP68Q9UHB9 627 aaKnown RBP21.97■■□□□ 1.11
SSBP4-204ENST00000597724 APAF1O14727 1248 aa21.96■■□□□ 1.11
SSBP4-204ENST00000597724 A1BGP04217 495 aa21.96■■□□□ 1.11
SSBP4-204ENST00000597724 EIF5P55010 431 aaKnown RBP21.96■■□□□ 1.11
SSBP4-204ENST00000597724 EIF4A1P60842 406 aaKnown RBP21.96■■□□□ 1.11
SSBP4-204ENST00000597724 BABAM1Q9NWV8 329 aa21.96■■□□□ 1.11
SSBP4-204ENST00000597724 COL15A1P39059 1388 aa21.96■■□□□ 1.11
SSBP4-204ENST00000597724 MMP10P09238 476 aa21.95■■□□□ 1.1
SSBP4-204ENST00000597724 KLHL34Q8N239 644 aa21.95■■□□□ 1.1
SSBP4-204ENST00000597724 ZPR1O75312 459 aa21.94■■□□□ 1.1
SSBP4-204ENST00000597724 IL6STP40189 918 aaPredicted RBP21.94■■□□□ 1.1
SSBP4-204ENST00000597724 NARFQ9UHQ1 456 aa21.94■■□□□ 1.1
SSBP4-204ENST00000597724 TSPYL4Q9UJ04 414 aa21.94■■□□□ 1.1
SSBP4-204ENST00000597724 GIGYF1O75420 1035 aaPredicted RBP21.92■■□□□ 1.1
SSBP4-204ENST00000597724 FKBP8Q14318 412 aa21.92■■□□□ 1.1
SSBP4-204ENST00000597724 USPL1Q5W0Q7 1092 aa21.92■■□□□ 1.1
SSBP4-204ENST00000597724 CD2APQ9Y5K6 639 aa21.92■■□□□ 1.1
SSBP4-204ENST00000597724 A0A087WZG4 1122 aa21.91■■□□□ 1.1
SSBP4-204ENST00000597724 CHL1O00533 1208 aa21.9■■□□□ 1.1
SSBP4-204ENST00000597724 NLGN2Q8NFZ4 835 aa21.9■■□□□ 1.1
SSBP4-204ENST00000597724 PIP4K2AP48426 406 aaPredicted RBP21.89■■□□□ 1.09
SSBP4-204ENST00000597724 BCL2L12Q9HB09 334 aa21.89■■□□□ 1.09
SSBP4-204ENST00000597724 ZNF330Q9Y3S2 320 aaPredicted RBP21.89■■□□□ 1.09
SSBP4-204ENST00000597724 DCAF8L1A6NGE4 600 aa21.88■■□□□ 1.09
SSBP4-204ENST00000597724 NBPF26B4DH59 902 aa21.88■■□□□ 1.09
SSBP4-204ENST00000597724 TM4SF1P30408 202 aa21.88■■□□□ 1.09
SSBP4-204ENST00000597724 NBPF10Q6P3W6 841 aaKnown RBP21.88■■□□□ 1.09
SSBP4-204ENST00000597724 NPM2Q86SE8 214 aaKnown RBP21.88■■□□□ 1.09
SSBP4-204ENST00000597724 NBPF15Q8N660 670 aa21.88■■□□□ 1.09
SSBP4-204ENST00000597724 TBC1D2BQ9UPU7 963 aa21.88■■□□□ 1.09
SSBP4-204ENST00000597724 PARP3Q9Y6F1 533 aa21.88■■□□□ 1.09
SSBP4-204ENST00000597724 LAMB4A4D0S4 1761 aa21.87■■□□□ 1.09
SSBP4-204ENST00000597724 LAS1LQ9Y4W2 734 aaKnown RBP21.87■■□□□ 1.09
SSBP4-204ENST00000597724 DDR1Q08345 913 aa21.86■■□□□ 1.09
SSBP4-204ENST00000597724 CFAP44Q96MT7 982 aa21.86■■□□□ 1.09
SSBP4-204ENST00000597724 GOLGB1Q14789 3259 aaKnown RBP21.85■■□□□ 1.09
SSBP4-204ENST00000597724 POLRMTO00411 1230 aaKnown RBP21.84■■□□□ 1.09
SSBP4-204ENST00000597724 ZNF853P0CG23 659 aa21.84■■□□□ 1.09
SSBP4-204ENST00000597724 CALD1Q05682 793 aaKnown RBP21.84■■□□□ 1.09
SSBP4-204ENST00000597724 NFIXQ14938 502 aa21.84■■□□□ 1.09
SSBP4-204ENST00000597724 DZIP3Q86Y13 1208 aaKnown RBP21.84■■□□□ 1.09
SSBP4-204ENST00000597724 CAMTA2O94983 1202 aa21.83■■□□□ 1.09
SSBP4-204ENST00000597724 CCDC27Q2M243 656 aa21.83■■□□□ 1.09
SSBP4-204ENST00000597724 NCBP3Q53F19 620 aaKnown RBP21.82■■□□□ 1.08
SSBP4-204ENST00000597724 FAM9BQ8IZU0 186 aa21.82■■□□□ 1.08
SSBP4-204ENST00000597724 IFT57Q9NWB7 429 aa21.82■■□□□ 1.08
SSBP4-204ENST00000597724 SCN7AQ01118 1682 aa21.82■■□□□ 1.08
SSBP4-204ENST00000597724 C10orf71Q711Q0 1435 aa21.81■■□□□ 1.08
SSBP4-204ENST00000597724 KIF13BQ9NQT8 1826 aa21.81■■□□□ 1.08
SSBP4-204ENST00000597724 SENP3-EIF4A1A0A087X0R7 540 aa21.81■■□□□ 1.08
SSBP4-204ENST00000597724 GNAI1P63096 354 aa21.81■■□□□ 1.08
SSBP4-204ENST00000597724 KRT24Q2M2I5 525 aa21.8■■□□□ 1.08
SSBP4-204ENST00000597724 MBIPQ9NS73 344 aa21.8■■□□□ 1.08
SSBP4-204ENST00000597724 ERBB4Q15303 1308 aa21.8■■□□□ 1.08
SSBP4-204ENST00000597724 EIF2S2P20042 333 aaKnown RBP21.79■■□□□ 1.08
SSBP4-204ENST00000597724 TGFB2P61812 414 aa21.79■■□□□ 1.08
SSBP4-204ENST00000597724 GPR162Q16538 588 aa21.79■■□□□ 1.08
SSBP4-204ENST00000597724 TBC1D9BQ66K14 1250 aa21.79■■□□□ 1.08
SSBP4-204ENST00000597724 BICDL1Q6ZP65 573 aa21.79■■□□□ 1.08
SSBP4-204ENST00000597724 WWC1Q8IX03 1113 aa21.79■■□□□ 1.08
SSBP4-204ENST00000597724 UTRNP46939 3433 aa21.78■■□□□ 1.08
SSBP4-204ENST00000597724 SERPINB2P05120 415 aa21.78■■□□□ 1.08
SSBP4-204ENST00000597724 CLEC4GQ6UXB4 293 aa21.78■■□□□ 1.08
SSBP4-204ENST00000597724 BCORQ6W2J9 1755 aa21.78■■□□□ 1.08
SSBP4-204ENST00000597724 RGL2O15211 777 aa21.77■■□□□ 1.08
SSBP4-204ENST00000597724 MYL6BP14649 208 aa21.77■■□□□ 1.08
SSBP4-204ENST00000597724 PDIA6Q15084 440 aa21.77■■□□□ 1.08
SSBP4-204ENST00000597724 AFDNP55196 1824 aaKnown RBP21.77■■□□□ 1.08
SSBP4-204ENST00000597724 HOXB7P09629 217 aa21.76■■□□□ 1.07
SSBP4-204ENST00000597724 PELP1Q8IZL8 1130 aaKnown RBP21.76■■□□□ 1.07
SSBP4-204ENST00000597724 NGEFQ8N5V2 710 aa21.76■■□□□ 1.07
SSBP4-204ENST00000597724 KIAA1551Q9HCM1 1747 aa21.76■■□□□ 1.07
SSBP4-204ENST00000597724 NRXN2Q9P2S2 1712 aa21.76■■□□□ 1.07
SSBP4-204ENST00000597724 PXDNLA1KZ92 1463 aa21.76■■□□□ 1.07
SSBP4-204ENST00000597724 LRP10Q7Z4F1 713 aa21.75■■□□□ 1.07
SSBP4-204ENST00000597724 NECTIN2Q92692 538 aa21.75■■□□□ 1.07
SSBP4-204ENST00000597724 ZNF652Q9Y2D9 606 aa21.75■■□□□ 1.07
SSBP4-204ENST00000597724 A0A0G2JLW4 131 aa21.74■■□□□ 1.07
SSBP4-204ENST00000597724 YBX3P16989 372 aaKnown RBP eCLIP21.74■■□□□ 1.07
SSBP4-204ENST00000597724 DUSP27Q5VZP5 1158 aa21.74■■□□□ 1.07
SSBP4-204ENST00000597724 TTLL7Q6ZT98 887 aa21.74■■□□□ 1.07
SSBP4-204ENST00000597724 SETDB2Q96T68 719 aa21.74■■□□□ 1.07
SSBP4-204ENST00000597724 CARMIL3Q8ND23 1372 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms