RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 LAS1LQ9Y4W2 734 aaKnown RBP13.81□□□□□ -0.2
LIG1-210ENST00000596332 C5P01031 1676 aa13.81□□□□□ -0.2
LIG1-210ENST00000596332 C4BP0C0L5 1744 aa13.81□□□□□ -0.2
LIG1-210ENST00000596332 SNRPA1P09661 255 aaKnown RBP13.8□□□□□ -0.2
LIG1-210ENST00000596332 CRKLP46109 303 aaKnown RBP13.8□□□□□ -0.2
LIG1-210ENST00000596332 PDIA6Q15084 440 aa13.8□□□□□ -0.2
LIG1-210ENST00000596332 CNTNAP4Q9C0A0 1308 aa13.8□□□□□ -0.2
LIG1-210ENST00000596332 FANCIQ9NVI1 1328 aa13.8□□□□□ -0.2
LIG1-210ENST00000596332 A1BGP04217 495 aa13.79□□□□□ -0.2
LIG1-210ENST00000596332 HNRNPUQ00839 825 aaKnown RBP eCLIP13.79□□□□□ -0.2
LIG1-210ENST00000596332 CALD1Q05682 793 aaKnown RBP13.79□□□□□ -0.2
LIG1-210ENST00000596332 PNPLA7Q6ZV29 1317 aa13.79□□□□□ -0.2
LIG1-210ENST00000596332 GOLGA2Q08379 1002 aa13.78□□□□□ -0.2
LIG1-210ENST00000596332 DUSP27Q5VZP5 1158 aa13.78□□□□□ -0.2
LIG1-210ENST00000596332 ZBTB1Q9Y2K1 713 aa13.78□□□□□ -0.2
LIG1-210ENST00000596332 RPS6KA4O75676 772 aa13.77□□□□□ -0.21
LIG1-210ENST00000596332 PIP4K2AP48426 406 aaPredicted RBP13.77□□□□□ -0.21
LIG1-210ENST00000596332 R3HDM1Q15032 1099 aaKnown RBP13.77□□□□□ -0.21
LIG1-210ENST00000596332 COL23A1Q86Y22 540 aaPredicted RBP13.77□□□□□ -0.21
LIG1-210ENST00000596332 TEX13AQ9BXU3 409 aaPredicted RBP13.77□□□□□ -0.21
LIG1-210ENST00000596332 TUBGCP6Q96RT7 1819 aa13.76□□□□□ -0.21
LIG1-210ENST00000596332 ELL2O00472 640 aaPredicted RBP13.76□□□□□ -0.21
LIG1-210ENST00000596332 VAMP4O75379 141 aa13.76□□□□□ -0.21
LIG1-210ENST00000596332 EIF5P55010 431 aaKnown RBP13.76□□□□□ -0.21
LIG1-210ENST00000596332 EXOSC9Q06265 439 aaKnown RBP13.76□□□□□ -0.21
LIG1-210ENST00000596332 CCDC87Q9NVE4 849 aa13.76□□□□□ -0.21
LIG1-210ENST00000596332 UBR3Q6ZT12 1888 aa13.76□□□□□ -0.21
LIG1-210ENST00000596332 SOS1Q07889 1333 aaPredicted RBP13.75□□□□□ -0.21
LIG1-210ENST00000596332 ZBED9Q6R2W3 1325 aa13.75□□□□□ -0.21
LIG1-210ENST00000596332 PSDA5PKW4 1024 aaPredicted RBP13.75□□□□□ -0.21
LIG1-210ENST00000596332 E9PSI1 815 aa13.75□□□□□ -0.21
LIG1-210ENST00000596332 PROSER3Q2NL68 480 aa13.75□□□□□ -0.21
LIG1-210ENST00000596332 GNPATO15228 680 aa13.74□□□□□ -0.21
LIG1-210ENST00000596332 STARD3NLO95772 234 aa13.74□□□□□ -0.21
LIG1-210ENST00000596332 HOXB7P09629 217 aa13.74□□□□□ -0.21
LIG1-210ENST00000596332 ARHGEF1Q92888 912 aaKnown RBP13.74□□□□□ -0.21
LIG1-210ENST00000596332 STK32BQ9NY57 414 aa13.74□□□□□ -0.21
LIG1-210ENST00000596332 CASZ1Q86V15 1759 aa13.73□□□□□ -0.21
LIG1-210ENST00000596332 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.73□□□□□ -0.21
LIG1-210ENST00000596332 BCL2L12Q9HB09 334 aa13.73□□□□□ -0.21
LIG1-210ENST00000596332 QSER1Q2KHR3 1735 aa13.73□□□□□ -0.21
LIG1-210ENST00000596332 ANXA1P04083 346 aa13.72□□□□□ -0.21
LIG1-210ENST00000596332 EIF2S2P20042 333 aaKnown RBP13.72□□□□□ -0.21
LIG1-210ENST00000596332 CANXP27824 592 aaKnown RBP13.72□□□□□ -0.21
LIG1-210ENST00000596332 SSFA2P28290 1259 aa13.72□□□□□ -0.21
LIG1-210ENST00000596332 IL6STP40189 918 aaPredicted RBP13.72□□□□□ -0.21
LIG1-210ENST00000596332 NECTIN2Q92692 538 aa13.72□□□□□ -0.21
LIG1-210ENST00000596332 MYH16Q9H6N6 1097 aa13.72□□□□□ -0.21
LIG1-210ENST00000596332 TFCP2L1Q9NZI6 479 aa13.72□□□□□ -0.21
LIG1-210ENST00000596332 LAMB4A4D0S4 1761 aa13.72□□□□□ -0.21
LIG1-210ENST00000596332 TWISTNBQ3B726 338 aaPredicted RBP13.71□□□□□ -0.21
LIG1-210ENST00000596332 AK7Q96M32 723 aa13.71□□□□□ -0.21
LIG1-210ENST00000596332 SGIP1Q9BQI5 828 aa13.71□□□□□ -0.21
LIG1-210ENST00000596332 RTCBQ9Y3I0 505 aaKnown RBP13.71□□□□□ -0.21
LIG1-210ENST00000596332 PHF14O94880 888 aa13.7□□□□□ -0.22
LIG1-210ENST00000596332 CHPF2Q9P2E5 772 aa13.7□□□□□ -0.22
LIG1-210ENST00000596332 SRP68Q9UHB9 627 aaKnown RBP13.7□□□□□ -0.22
LIG1-210ENST00000596332 ERBB4Q15303 1308 aa13.69□□□□□ -0.22
LIG1-210ENST00000596332 TCERG1O14776 1098 aaKnown RBP13.69□□□□□ -0.22
LIG1-210ENST00000596332 GYS1P13807 737 aa13.69□□□□□ -0.22
LIG1-210ENST00000596332 TRAPPC3LQ5T215 181 aa13.69□□□□□ -0.22
LIG1-210ENST00000596332 HDGFL1Q5TGJ6 251 aa13.69□□□□□ -0.22
LIG1-210ENST00000596332 TTLL7Q6ZT98 887 aa13.69□□□□□ -0.22
LIG1-210ENST00000596332 DDX21Q9NR30 783 aaKnown RBP eCLIP13.69□□□□□ -0.22
LIG1-210ENST00000596332 COL15A1P39059 1388 aa13.69□□□□□ -0.22
LIG1-210ENST00000596332 USP42Q9H9J4 1324 aaKnown RBP13.68□□□□□ -0.22
LIG1-210ENST00000596332 COL24A1Q17RW2 1714 aa13.68□□□□□ -0.22
LIG1-210ENST00000596332 CAMTA2O94983 1202 aa13.68□□□□□ -0.22
LIG1-210ENST00000596332 HMGB2P26583 209 aaKnown RBP13.68□□□□□ -0.22
LIG1-210ENST00000596332 G2E3Q7L622 706 aa13.68□□□□□ -0.22
LIG1-210ENST00000596332 PHAXQ9H814 394 aaKnown RBP13.68□□□□□ -0.22
LIG1-210ENST00000596332 NARFQ9UHQ1 456 aa13.68□□□□□ -0.22
LIG1-210ENST00000596332 TBC1D2BQ9UPU7 963 aa13.68□□□□□ -0.22
LIG1-210ENST00000596332 C4AP0C0L4 1744 aa13.67□□□□□ -0.22
LIG1-210ENST00000596332 MYL6BP14649 208 aa13.67□□□□□ -0.22
LIG1-210ENST00000596332 PTGER2P43116 358 aa13.67□□□□□ -0.22
LIG1-210ENST00000596332 FLAD1Q8NFF5 587 aa13.67□□□□□ -0.22
LIG1-210ENST00000596332 TM4SF1P30408 202 aa13.66□□□□□ -0.22
LIG1-210ENST00000596332 FKBP8Q14318 412 aa13.66□□□□□ -0.22
LIG1-210ENST00000596332 HLFQ16534 295 aa13.66□□□□□ -0.22
LIG1-210ENST00000596332 USPL1Q5W0Q7 1092 aa13.66□□□□□ -0.22
LIG1-210ENST00000596332 SLC16A10Q8TF71 515 aa13.66□□□□□ -0.22
LIG1-210ENST00000596332 DBF4Q9UBU7 674 aaPredicted RBP13.66□□□□□ -0.22
LIG1-210ENST00000596332 ZBTB7AO95365 584 aa13.65□□□□□ -0.22
LIG1-210ENST00000596332 CCDC30Q5VVM6 783 aa13.65□□□□□ -0.22
LIG1-210ENST00000596332 COPS6Q7L5N1 327 aa13.65□□□□□ -0.22
LIG1-210ENST00000596332 XAGE3Q8WTP9 111 aa13.65□□□□□ -0.22
LIG1-210ENST00000596332 SSH1Q8WYL5 1049 aa13.65□□□□□ -0.22
LIG1-210ENST00000596332 DZIP3Q86Y13 1208 aaKnown RBP13.64□□□□□ -0.23
LIG1-210ENST00000596332 MRPL50Q8N5N7 158 aaKnown RBP13.64□□□□□ -0.23
LIG1-210ENST00000596332 A0A087WZG4 1122 aa13.63□□□□□ -0.23
LIG1-210ENST00000596332 SLC4A2P04920 1241 aa13.63□□□□□ -0.23
LIG1-210ENST00000596332 RFC4P35249 363 aa13.63□□□□□ -0.23
LIG1-210ENST00000596332 RARSP54136 660 aaKnown RBP13.63□□□□□ -0.23
LIG1-210ENST00000596332 MSL1Q68DK7 614 aa13.63□□□□□ -0.23
LIG1-210ENST00000596332 YTHDC1Q96MU7 727 aaKnown RBP13.63□□□□□ -0.23
LIG1-210ENST00000596332 MTFR1LQ9H019 292 aa13.63□□□□□ -0.23
LIG1-210ENST00000596332 HYPKQ9NX55 129 aa13.63□□□□□ -0.23
LIG1-210ENST00000596332 ATF5Q9Y2D1 282 aaPredicted RBP13.63□□□□□ -0.23
LIG1-210ENST00000596332 MAP3K15Q6ZN16 1313 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms