RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 SOS1Q07889 1333 aaPredicted RBP14.53□□□□□ -0.08
SHKBP1-206ENST00000595523 TMPOP42166 694 aaKnown RBP14.53□□□□□ -0.08
SHKBP1-206ENST00000595523 FMNL2Q96PY5 1086 aa14.53□□□□□ -0.08
SHKBP1-206ENST00000595523 ZBTB1Q9Y2K1 713 aa14.53□□□□□ -0.08
SHKBP1-206ENST00000595523 PRAMEF22A3QJZ6 481 aa14.52□□□□□ -0.09
SHKBP1-206ENST00000595523 GYS1P13807 737 aa14.52□□□□□ -0.09
SHKBP1-206ENST00000595523 RIPK4P57078 832 aa14.52□□□□□ -0.09
SHKBP1-206ENST00000595523 TAF7Q15545 349 aaPredicted RBP14.52□□□□□ -0.09
SHKBP1-206ENST00000595523 RUNDC1Q96C34 613 aa14.52□□□□□ -0.09
SHKBP1-206ENST00000595523 MIS18AQ9NYP9 233 aa14.52□□□□□ -0.09
SHKBP1-206ENST00000595523 RRP7AQ9Y3A4 280 aaKnown RBP14.52□□□□□ -0.09
SHKBP1-206ENST00000595523 COL15A1P39059 1388 aa14.51□□□□□ -0.09
SHKBP1-206ENST00000595523 USP42Q9H9J4 1324 aaKnown RBP14.51□□□□□ -0.09
SHKBP1-206ENST00000595523 SRP68Q9UHB9 627 aaKnown RBP14.51□□□□□ -0.09
SHKBP1-206ENST00000595523 RFC4P35249 363 aa14.5□□□□□ -0.09
SHKBP1-206ENST00000595523 N4BP2Q86UW6 1770 aaPredicted RBP14.5□□□□□ -0.09
SHKBP1-206ENST00000595523 NRXN2Q9P2S2 1712 aa14.49□□□□□ -0.09
SHKBP1-206ENST00000595523 BRCA1P38398 1863 aaKnown RBP14.49□□□□□ -0.09
SHKBP1-206ENST00000595523 ANP32CO43423 234 aa14.49□□□□□ -0.09
SHKBP1-206ENST00000595523 STARD3NLO95772 234 aa14.49□□□□□ -0.09
SHKBP1-206ENST00000595523 NLGN2Q8NFZ4 835 aa14.49□□□□□ -0.09
SHKBP1-206ENST00000595523 TRIM35Q9UPQ4 493 aa14.49□□□□□ -0.09
SHKBP1-206ENST00000595523 USP16Q9Y5T5 823 aa14.49□□□□□ -0.09
SHKBP1-206ENST00000595523 CHD4Q14839 1912 aa14.49□□□□□ -0.09
SHKBP1-206ENST00000595523 MMP10P09238 476 aa14.48□□□□□ -0.09
SHKBP1-206ENST00000595523 CANXP27824 592 aaKnown RBP14.48□□□□□ -0.09
SHKBP1-206ENST00000595523 EIF5P55010 431 aaKnown RBP14.48□□□□□ -0.09
SHKBP1-206ENST00000595523 NEUROD2Q15784 382 aa14.48□□□□□ -0.09
SHKBP1-206ENST00000595523 KLHL34Q8N239 644 aa14.48□□□□□ -0.09
SHKBP1-206ENST00000595523 TEX13AQ9BXU3 409 aaPredicted RBP14.48□□□□□ -0.09
SHKBP1-206ENST00000595523 A1BGP04217 495 aa14.47□□□□□ -0.09
SHKBP1-206ENST00000595523 FKBP8Q14318 412 aa14.47□□□□□ -0.09
SHKBP1-206ENST00000595523 NLGN1Q8N2Q7 840 aa14.47□□□□□ -0.09
SHKBP1-206ENST00000595523 PNISRQ8TF01 805 aaKnown RBP14.47□□□□□ -0.09
SHKBP1-206ENST00000595523 SNRPA1P09661 255 aaKnown RBP14.46□□□□□ -0.09
SHKBP1-206ENST00000595523 PIP4K2AP48426 406 aaPredicted RBP14.46□□□□□ -0.09
SHKBP1-206ENST00000595523 EIF4A1P60842 406 aaKnown RBP14.46□□□□□ -0.09
SHKBP1-206ENST00000595523 LMOD3Q0VAK6 560 aa14.46□□□□□ -0.09
SHKBP1-206ENST00000595523 USPL1Q5W0Q7 1092 aa14.46□□□□□ -0.09
SHKBP1-206ENST00000595523 BCL2L12Q9HB09 334 aa14.46□□□□□ -0.09
SHKBP1-206ENST00000595523 NARFQ9UHQ1 456 aa14.46□□□□□ -0.09
SHKBP1-206ENST00000595523 C10orf71Q711Q0 1435 aa14.46□□□□□ -0.09
SHKBP1-206ENST00000595523 DDR1Q08345 913 aa14.45□□□□□ -0.1
SHKBP1-206ENST00000595523 NUP98P52948 1817 aa14.45□□□□□ -0.1
SHKBP1-206ENST00000595523 NBPF26B4DH59 902 aa14.44□□□□□ -0.1
SHKBP1-206ENST00000595523 APAF1O14727 1248 aa14.44□□□□□ -0.1
SHKBP1-206ENST00000595523 GIGYF1O75420 1035 aaPredicted RBP14.44□□□□□ -0.1
SHKBP1-206ENST00000595523 IL6STP40189 918 aaPredicted RBP14.44□□□□□ -0.1
SHKBP1-206ENST00000595523 NBPF10Q6P3W6 841 aaKnown RBP14.44□□□□□ -0.1
SHKBP1-206ENST00000595523 NBPF15Q8N660 670 aa14.44□□□□□ -0.1
SHKBP1-206ENST00000595523 MRS2Q9HD23 443 aa14.44□□□□□ -0.1
SHKBP1-206ENST00000595523 CD2APQ9Y5K6 639 aa14.44□□□□□ -0.1
SHKBP1-206ENST00000595523 ANKRD31Q8N7Z5 1873 aa14.44□□□□□ -0.1
SHKBP1-206ENST00000595523 DLEC1Q9Y238 1755 aa14.43□□□□□ -0.1
SHKBP1-206ENST00000595523 ZPR1O75312 459 aa14.43□□□□□ -0.1
SHKBP1-206ENST00000595523 TM4SF1P30408 202 aa14.43□□□□□ -0.1
SHKBP1-206ENST00000595523 TSPYL4Q9UJ04 414 aa14.43□□□□□ -0.1
SHKBP1-206ENST00000595523 PXDNLA1KZ92 1463 aa14.43□□□□□ -0.1
SHKBP1-206ENST00000595523 BABAM1Q9NWV8 329 aa14.42□□□□□ -0.1
SHKBP1-206ENST00000595523 TBC1D2BQ9UPU7 963 aa14.42□□□□□ -0.1
SHKBP1-206ENST00000595523 ZNF330Q9Y3S2 320 aaPredicted RBP14.42□□□□□ -0.1
SHKBP1-206ENST00000595523 A0A087WZG4 1122 aa14.41□□□□□ -0.1
SHKBP1-206ENST00000595523 POLRMTO00411 1230 aaKnown RBP14.41□□□□□ -0.1
SHKBP1-206ENST00000595523 CHL1O00533 1208 aa14.41□□□□□ -0.1
SHKBP1-206ENST00000595523 NFIXQ14938 502 aa14.41□□□□□ -0.1
SHKBP1-206ENST00000595523 ARFGEF1Q9Y6D6 1849 aa14.41□□□□□ -0.1
SHKBP1-206ENST00000595523 CAMTA2O94983 1202 aa14.4□□□□□ -0.1
SHKBP1-206ENST00000595523 PARP3Q9Y6F1 533 aa14.4□□□□□ -0.1
SHKBP1-206ENST00000595523 COL11A2P13942 1736 aaPredicted RBP14.39□□□□□ -0.11
SHKBP1-206ENST00000595523 SENP3-EIF4A1A0A087X0R7 540 aa14.39□□□□□ -0.11
SHKBP1-206ENST00000595523 YBX3P16989 372 aaKnown RBP eCLIP14.39□□□□□ -0.11
SHKBP1-206ENST00000595523 KRT24Q2M2I5 525 aa14.39□□□□□ -0.11
SHKBP1-206ENST00000595523 DZIP3Q86Y13 1208 aaKnown RBP14.39□□□□□ -0.11
SHKBP1-206ENST00000595523 ANKRD36CQ5JPF3 1778 aa14.38□□□□□ -0.11
SHKBP1-206ENST00000595523 ZNF853P0CG23 659 aa14.38□□□□□ -0.11
SHKBP1-206ENST00000595523 TBC1D9BQ66K14 1250 aa14.38□□□□□ -0.11
SHKBP1-206ENST00000595523 LAS1LQ9Y4W2 734 aaKnown RBP14.38□□□□□ -0.11
SHKBP1-206ENST00000595523 CARMIL3Q8ND23 1372 aa14.37□□□□□ -0.11
SHKBP1-206ENST00000595523 CFAP44Q96MT7 982 aa14.37□□□□□ -0.11
SHKBP1-206ENST00000595523 CACNA1SQ13698 1873 aa14.37□□□□□ -0.11
SHKBP1-206ENST00000595523 DCAF8L1A6NGE4 600 aa14.36□□□□□ -0.11
SHKBP1-206ENST00000595523 PDIA6Q15084 440 aa14.36□□□□□ -0.11
SHKBP1-206ENST00000595523 GPR162Q16538 588 aa14.36□□□□□ -0.11
SHKBP1-206ENST00000595523 BICDL1Q6ZP65 573 aa14.36□□□□□ -0.11
SHKBP1-206ENST00000595523 LRP10Q7Z4F1 713 aa14.36□□□□□ -0.11
SHKBP1-206ENST00000595523 PELP1Q8IZL8 1130 aaKnown RBP14.36□□□□□ -0.11
SHKBP1-206ENST00000595523 MBIPQ9NS73 344 aa14.36□□□□□ -0.11
SHKBP1-206ENST00000595523 WWC3Q9ULE0 1092 aa14.36□□□□□ -0.11
SHKBP1-206ENST00000595523 SERPINB2P05120 415 aa14.35□□□□□ -0.11
SHKBP1-206ENST00000595523 TGFB2P61812 414 aa14.35□□□□□ -0.11
SHKBP1-206ENST00000595523 PROSER3Q2NL68 480 aa14.35□□□□□ -0.11
SHKBP1-206ENST00000595523 IFT57Q9NWB7 429 aa14.35□□□□□ -0.11
SHKBP1-206ENST00000595523 ERBB4Q15303 1308 aa14.35□□□□□ -0.11
SHKBP1-206ENST00000595523 A0A0G2JLW4 131 aa14.34□□□□□ -0.11
SHKBP1-206ENST00000595523 MYL6BP14649 208 aa14.34□□□□□ -0.11
SHKBP1-206ENST00000595523 DPEP1P16444 411 aa14.34□□□□□ -0.11
SHKBP1-206ENST00000595523 EIF2S2P20042 333 aaKnown RBP14.34□□□□□ -0.11
SHKBP1-206ENST00000595523 KCNA3P22001 575 aa14.34□□□□□ -0.11
SHKBP1-206ENST00000595523 CCDC27Q2M243 656 aa14.34□□□□□ -0.11
SHKBP1-206ENST00000595523 NPM2Q86SE8 214 aaKnown RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 466.7 ms