RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 NOS2P35228 1153 aa9.19□□□□□ -0.94
SMAD4-216ENST00000593223 FAM69CQ0P6D2 419 aa9.19□□□□□ -0.94
SMAD4-216ENST00000593223 TEAD4Q15561 434 aa9.19□□□□□ -0.94
SMAD4-216ENST00000593223 NBPF1Q3BBV0 1214 aa9.19□□□□□ -0.94
SMAD4-216ENST00000593223 CCDC155Q8N6L0 562 aa9.19□□□□□ -0.94
SMAD4-216ENST00000593223 GAS2L2Q8NHY3 880 aa9.19□□□□□ -0.94
SMAD4-216ENST00000593223 L3MBTL2Q969R5 705 aa9.19□□□□□ -0.94
SMAD4-216ENST00000593223 VTI1AQ96AJ9 217 aa9.19□□□□□ -0.94
SMAD4-216ENST00000593223 A0A1B0GTH6 734 aa9.18□□□□□ -0.94
SMAD4-216ENST00000593223 SLC35F4A4IF30 521 aa9.18□□□□□ -0.94
SMAD4-216ENST00000593223 CARNS1A5YM72 827 aa9.18□□□□□ -0.94
SMAD4-216ENST00000593223 C21orf2O43822 256 aa9.18□□□□□ -0.94
SMAD4-216ENST00000593223 IGFBP4P22692 258 aa9.18□□□□□ -0.94
SMAD4-216ENST00000593223 PDE4CQ08493 712 aa9.18□□□□□ -0.94
SMAD4-216ENST00000593223 RIPOR1Q6ZS17 1223 aa9.18□□□□□ -0.94
SMAD4-216ENST00000593223 GPAMQ9HCL2 828 aa9.18□□□□□ -0.94
SMAD4-216ENST00000593223 USTQ9Y2C2 406 aa9.18□□□□□ -0.94
SMAD4-216ENST00000593223 DYRK1BQ9Y463 629 aa9.18□□□□□ -0.94
SMAD4-216ENST00000593223 SENP3-EIF4A1A0A087X0R7 540 aa9.17□□□□□ -0.94
SMAD4-216ENST00000593223 TMEM88BA6NKF7 163 aa9.17□□□□□ -0.94
SMAD4-216ENST00000593223 WEE1P30291 646 aa9.17□□□□□ -0.94
SMAD4-216ENST00000593223 ZDHHC1Q8WTX9 485 aa9.17□□□□□ -0.94
SMAD4-216ENST00000593223 CLP1Q92989 425 aaKnown RBP9.17□□□□□ -0.94
SMAD4-216ENST00000593223 TATP17735 454 aaPredicted RBP9.16□□□□□ -0.94
SMAD4-216ENST00000593223 NXF1Q9UBU9 619 aaKnown RBP9.16□□□□□ -0.94
SMAD4-216ENST00000593223 HCN4Q9Y3Q4 1203 aa9.16□□□□□ -0.94
SMAD4-216ENST00000593223 EML1O00423 815 aa9.15□□□□□ -0.94
SMAD4-216ENST00000593223 PPFIA3O75145 1194 aa9.15□□□□□ -0.94
SMAD4-216ENST00000593223 F11P03951 625 aa9.15□□□□□ -0.94
SMAD4-216ENST00000593223 ATP2B4P23634 1241 aa9.15□□□□□ -0.94
SMAD4-216ENST00000593223 MSX1P28360 303 aa9.15□□□□□ -0.94
SMAD4-216ENST00000593223 VEGFBP49765 207 aa9.15□□□□□ -0.94
SMAD4-216ENST00000593223 SH3PXD2AQ5TCZ1 1133 aa9.15□□□□□ -0.94
SMAD4-216ENST00000593223 ZNF295-AS1Q8N0V1 137 aa9.15□□□□□ -0.94
SMAD4-216ENST00000593223 PGBD3Q8N328 593 aa9.15□□□□□ -0.94
SMAD4-216ENST00000593223 FOXO3O43524 673 aa9.14□□□□□ -0.95
SMAD4-216ENST00000593223 ARSJQ5FYB0 599 aaPredicted RBP9.14□□□□□ -0.95
SMAD4-216ENST00000593223 BICDL1Q6ZP65 573 aa9.14□□□□□ -0.95
SMAD4-216ENST00000593223 NGLY1Q96IV0 654 aa9.14□□□□□ -0.95
SMAD4-216ENST00000593223 CXXC1Q9P0U4 656 aaPredicted RBP9.14□□□□□ -0.95
SMAD4-216ENST00000593223 ITGA6P23229 1130 aa9.13□□□□□ -0.95
SMAD4-216ENST00000593223 TXLNAP40222 546 aa9.13□□□□□ -0.95
SMAD4-216ENST00000593223 STAG2Q8N3U4 1231 aa9.13□□□□□ -0.95
SMAD4-216ENST00000593223 C1orf216Q8TAB5 229 aa9.13□□□□□ -0.95
SMAD4-216ENST00000593223 MKNK1Q9BUB5 465 aa9.13□□□□□ -0.95
SMAD4-216ENST00000593223 C2orf49Q9BVC5 232 aaPredicted RBP9.13□□□□□ -0.95
SMAD4-216ENST00000593223 RUBCNLQ9H714 662 aa9.13□□□□□ -0.95
SMAD4-216ENST00000593223 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.13□□□□□ -0.95
SMAD4-216ENST00000593223 ZDHHC3Q9NYG2 299 aa9.13□□□□□ -0.95
SMAD4-216ENST00000593223 CDC14CA4D256 554 aa9.12□□□□□ -0.95
SMAD4-216ENST00000593223 H7C1W4 665 aa9.12□□□□□ -0.95
SMAD4-216ENST00000593223 FKBP5Q13451 457 aaPredicted RBP9.12□□□□□ -0.95
SMAD4-216ENST00000593223 OCLNQ16625 522 aa9.12□□□□□ -0.95
SMAD4-216ENST00000593223 PHACTR1Q9C0D0 580 aa9.12□□□□□ -0.95
SMAD4-216ENST00000593223 NEUROD4Q9HD90 331 aa9.12□□□□□ -0.95
SMAD4-216ENST00000593223 TERTO14746 1132 aaKnown RBP9.11□□□□□ -0.95
SMAD4-216ENST00000593223 B4GALNT3Q6L9W6 998 aa9.11□□□□□ -0.95
SMAD4-216ENST00000593223 ALDH16A1Q8IZ83 802 aa9.11□□□□□ -0.95
SMAD4-216ENST00000593223 RHPN1Q8TCX5 695 aa9.11□□□□□ -0.95
SMAD4-216ENST00000593223 SLC16A10Q8TF71 515 aa9.11□□□□□ -0.95
SMAD4-216ENST00000593223 SLAIN2Q9P270 581 aa9.11□□□□□ -0.95
SMAD4-216ENST00000593223 GJA3Q9Y6H8 435 aa9.11□□□□□ -0.95
SMAD4-216ENST00000593223 ATP4AP20648 1035 aa9.1□□□□□ -0.95
SMAD4-216ENST00000593223 HIRAP54198 1017 aaPredicted RBP9.1□□□□□ -0.95
SMAD4-216ENST00000593223 EFHC2Q5JST6 749 aa9.1□□□□□ -0.95
SMAD4-216ENST00000593223 C1orf53Q5VUE5 145 aa9.09□□□□□ -0.95
SMAD4-216ENST00000593223 NPAS3Q8IXF0 933 aa9.09□□□□□ -0.95
SMAD4-216ENST00000593223 TRIM22Q8IYM9 498 aa9.09□□□□□ -0.95
SMAD4-216ENST00000593223 VWA5B2Q8N398 1253 aa9.09□□□□□ -0.95
SMAD4-216ENST00000593223 NUCKS1Q9H1E3 243 aaKnown RBP9.09□□□□□ -0.95
SMAD4-216ENST00000593223 A0A1W2PNR3 127 aa9.08□□□□□ -0.96
SMAD4-216ENST00000593223 H3BM21 787 aa9.08□□□□□ -0.96
SMAD4-216ENST00000593223 SSFA2P28290 1259 aa9.08□□□□□ -0.96
SMAD4-216ENST00000593223 POTEAQ6S8J7 498 aa9.08□□□□□ -0.96
SMAD4-216ENST00000593223 SV2AQ7L0J3 742 aa9.08□□□□□ -0.96
SMAD4-216ENST00000593223 CUEDC1Q9NWM3 386 aaPredicted RBP9.08□□□□□ -0.96
SMAD4-216ENST00000593223 PTCD1O75127 700 aaKnown RBP9.07□□□□□ -0.96
SMAD4-216ENST00000593223 WFS1O76024 890 aa9.07□□□□□ -0.96
SMAD4-216ENST00000593223 DBN1Q16643 649 aa9.07□□□□□ -0.96
SMAD4-216ENST00000593223 FOXR1Q6PIV2 292 aa9.07□□□□□ -0.96
SMAD4-216ENST00000593223 GMCL1Q96IK5 515 aa9.07□□□□□ -0.96
SMAD4-216ENST00000593223 ZIC5Q96T25 663 aa9.07□□□□□ -0.96
SMAD4-216ENST00000593223 CRISPLD1Q9H336 500 aa9.07□□□□□ -0.96
SMAD4-216ENST00000593223 NAA30Q147X3 362 aaPredicted RBP9.06□□□□□ -0.96
SMAD4-216ENST00000593223 RTN1Q16799 776 aa9.06□□□□□ -0.96
SMAD4-216ENST00000593223 LRRC69Q6ZNQ3 347 aa9.06□□□□□ -0.96
SMAD4-216ENST00000593223 ZNF837Q96EG3 531 aaPredicted RBP9.06□□□□□ -0.96
SMAD4-216ENST00000593223 LBRQ14739 615 aaKnown RBP9.05□□□□□ -0.96
SMAD4-216ENST00000593223 IRF7Q92985 503 aa9.05□□□□□ -0.96
SMAD4-216ENST00000593223 GTPBP3Q969Y2 492 aaKnown RBP9.05□□□□□ -0.96
SMAD4-216ENST00000593223 ANKIB1Q9P2G1 1089 aa9.05□□□□□ -0.96
SMAD4-216ENST00000593223 MTMR7Q9Y216 660 aa9.05□□□□□ -0.96
SMAD4-216ENST00000593223 GPC6Q9Y625 555 aaPredicted RBP9.05□□□□□ -0.96
SMAD4-216ENST00000593223 PDIA4P13667 645 aaKnown RBP9.04□□□□□ -0.96
SMAD4-216ENST00000593223 NFX1Q12986 1120 aaKnown RBP9.04□□□□□ -0.96
SMAD4-216ENST00000593223 HIF1AQ16665 826 aa9.04□□□□□ -0.96
SMAD4-216ENST00000593223 FIGNL1Q6PIW4 674 aa9.04□□□□□ -0.96
SMAD4-216ENST00000593223 CAPN12Q6ZSI9 719 aa9.04□□□□□ -0.96
SMAD4-216ENST00000593223 NLRP8Q86W28 1048 aa9.04□□□□□ -0.96
SMAD4-216ENST00000593223 COL26A1Q96A83 441 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms