RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 PPP1R1BQ9UD71 204 aaPredicted RBP15.61■□□□□ 0.09
LIG3-213ENST00000590630 TRIM35Q9UPQ4 493 aa15.61■□□□□ 0.09
LIG3-213ENST00000590630 POLD1P28340 1107 aa15.6■□□□□ 0.09
LIG3-213ENST00000590630 MIS18AQ9NYP9 233 aa15.6■□□□□ 0.09
LIG3-213ENST00000590630 SNRPA1P09661 255 aaKnown RBP15.59■□□□□ 0.09
LIG3-213ENST00000590630 SMIM5Q71RC9 77 aa15.59■□□□□ 0.09
LIG3-213ENST00000590630 RFC4P35249 363 aa15.58■□□□□ 0.08
LIG3-213ENST00000590630 ARHGEF1Q92888 912 aaKnown RBP15.58■□□□□ 0.08
LIG3-213ENST00000590630 TSPYL4Q9UJ04 414 aa15.58■□□□□ 0.08
LIG3-213ENST00000590630 ZBTB1Q9Y2K1 713 aa15.58■□□□□ 0.08
LIG3-213ENST00000590630 SOS1Q07889 1333 aaPredicted RBP15.58■□□□□ 0.08
LIG3-213ENST00000590630 ARXQ96QS3 562 aa15.57■□□□□ 0.08
LIG3-213ENST00000590630 EIF4A1P60842 406 aaKnown RBP15.56■□□□□ 0.08
LIG3-213ENST00000590630 CALD1Q05682 793 aaKnown RBP15.56■□□□□ 0.08
LIG3-213ENST00000590630 MSL1Q68DK7 614 aa15.56■□□□□ 0.08
LIG3-213ENST00000590630 COL15A1P39059 1388 aa15.56■□□□□ 0.08
LIG3-213ENST00000590630 USP42Q9H9J4 1324 aaKnown RBP15.55■□□□□ 0.08
LIG3-213ENST00000590630 CHL1O00533 1208 aa15.55■□□□□ 0.08
LIG3-213ENST00000590630 GIGYF1O75420 1035 aaPredicted RBP15.55■□□□□ 0.08
LIG3-213ENST00000590630 CANXP27824 592 aaKnown RBP15.55■□□□□ 0.08
LIG3-213ENST00000590630 NCBP3Q53F19 620 aaKnown RBP15.55■□□□□ 0.08
LIG3-213ENST00000590630 USP16Q9Y5T5 823 aa15.55■□□□□ 0.08
LIG3-213ENST00000590630 GOLGB1Q14789 3259 aaKnown RBP15.55■□□□□ 0.08
LIG3-213ENST00000590630 PRAMEF22A3QJZ6 481 aa15.54■□□□□ 0.08
LIG3-213ENST00000590630 CCER2I3L3R5 266 aa15.54■□□□□ 0.08
LIG3-213ENST00000590630 IL6STP40189 918 aaPredicted RBP15.54■□□□□ 0.08
LIG3-213ENST00000590630 EIF5P55010 431 aaKnown RBP15.54■□□□□ 0.08
LIG3-213ENST00000590630 CCDC27Q2M243 656 aa15.54■□□□□ 0.08
LIG3-213ENST00000590630 DIEXFQ68CQ4 756 aaKnown RBP15.54■□□□□ 0.08
LIG3-213ENST00000590630 FAM9BQ8IZU0 186 aa15.54■□□□□ 0.08
LIG3-213ENST00000590630 NLGN1Q8N2Q7 840 aa15.54■□□□□ 0.08
LIG3-213ENST00000590630 CFAP44Q96MT7 982 aa15.54■□□□□ 0.08
LIG3-213ENST00000590630 A0A087WZG4 1122 aa15.53■□□□□ 0.08
LIG3-213ENST00000590630 ZPR1O75312 459 aa15.53■□□□□ 0.08
LIG3-213ENST00000590630 A1BGP04217 495 aa15.53■□□□□ 0.08
LIG3-213ENST00000590630 GYS1P13807 737 aa15.53■□□□□ 0.08
LIG3-213ENST00000590630 SCN7AQ01118 1682 aa15.53■□□□□ 0.08
LIG3-213ENST00000590630 NPM2Q86SE8 214 aaKnown RBP15.52■□□□□ 0.08
LIG3-213ENST00000590630 IFT57Q9NWB7 429 aa15.52■□□□□ 0.08
LIG3-213ENST00000590630 NARFQ9UHQ1 456 aa15.52■□□□□ 0.08
LIG3-213ENST00000590630 LAS1LQ9Y4W2 734 aaKnown RBP15.52■□□□□ 0.08
LIG3-213ENST00000590630 GNAI1P63096 354 aa15.51■□□□□ 0.07
LIG3-213ENST00000590630 NGEFQ8N5V2 710 aa15.51■□□□□ 0.07
LIG3-213ENST00000590630 FHDC1Q9C0D6 1143 aaPredicted RBP15.51■□□□□ 0.07
LIG3-213ENST00000590630 SRP68Q9UHB9 627 aaKnown RBP15.51■□□□□ 0.07
LIG3-213ENST00000590630 BCORQ6W2J9 1755 aa15.51■□□□□ 0.07
LIG3-213ENST00000590630 MMP10P09238 476 aa15.5■□□□□ 0.07
LIG3-213ENST00000590630 ZNF853P0CG23 659 aa15.5■□□□□ 0.07
LIG3-213ENST00000590630 WWC1Q8IX03 1113 aa15.5■□□□□ 0.07
LIG3-213ENST00000590630 ZNF330Q9Y3S2 320 aaPredicted RBP15.5■□□□□ 0.07
LIG3-213ENST00000590630 ERBB4Q15303 1308 aa15.49■□□□□ 0.07
LIG3-213ENST00000590630 USPL1Q5W0Q7 1092 aa15.49■□□□□ 0.07
LIG3-213ENST00000590630 SYT17Q9BSW7 474 aa15.49■□□□□ 0.07
LIG3-213ENST00000590630 MBIPQ9NS73 344 aa15.49■□□□□ 0.07
LIG3-213ENST00000590630 KIF13BQ9NQT8 1826 aa15.49■□□□□ 0.07
LIG3-213ENST00000590630 NBPF26B4DH59 902 aa15.48■□□□□ 0.07
LIG3-213ENST00000590630 FKBP8Q14318 412 aa15.48■□□□□ 0.07
LIG3-213ENST00000590630 NBPF10Q6P3W6 841 aaKnown RBP15.48■□□□□ 0.07
LIG3-213ENST00000590630 NBPF15Q8N660 670 aa15.48■□□□□ 0.07
LIG3-213ENST00000590630 UTRNP46939 3433 aa15.48■□□□□ 0.07
LIG3-213ENST00000590630 IL16Q14005 1332 aa15.47■□□□□ 0.07
LIG3-213ENST00000590630 HOXB7P09629 217 aa15.47■□□□□ 0.07
LIG3-213ENST00000590630 PIP4K2AP48426 406 aaPredicted RBP15.47■□□□□ 0.07
LIG3-213ENST00000590630 CD2APQ9Y5K6 639 aa15.47■□□□□ 0.07
LIG3-213ENST00000590630 AFDNP55196 1824 aaKnown RBP15.46■□□□□ 0.07
LIG3-213ENST00000590630 SENP3-EIF4A1A0A087X0R7 540 aa15.46■□□□□ 0.07
LIG3-213ENST00000590630 DZIP3Q86Y13 1208 aaKnown RBP15.46■□□□□ 0.07
LIG3-213ENST00000590630 KLHL34Q8N239 644 aa15.46■□□□□ 0.07
LIG3-213ENST00000590630 BCL2L12Q9HB09 334 aa15.46■□□□□ 0.07
LIG3-213ENST00000590630 TBC1D2BQ9UPU7 963 aa15.46■□□□□ 0.07
LIG3-213ENST00000590630 PARP3Q9Y6F1 533 aa15.46■□□□□ 0.07
LIG3-213ENST00000590630 RGL2O15211 777 aa15.45■□□□□ 0.06
LIG3-213ENST00000590630 TM4SF1P30408 202 aa15.45■□□□□ 0.06
LIG3-213ENST00000590630 KRT24Q2M2I5 525 aa15.45■□□□□ 0.06
LIG3-213ENST00000590630 WDR63Q8IWG1 891 aa15.45■□□□□ 0.06
LIG3-213ENST00000590630 NRXN2Q9P2S2 1712 aa15.45■□□□□ 0.06
LIG3-213ENST00000590630 CAMTA2O94983 1202 aa15.44■□□□□ 0.06
LIG3-213ENST00000590630 EIF2S2P20042 333 aaKnown RBP15.44■□□□□ 0.06
LIG3-213ENST00000590630 NUP98P52948 1817 aa15.44■□□□□ 0.06
LIG3-213ENST00000590630 C10orf71Q711Q0 1435 aa15.43■□□□□ 0.06
LIG3-213ENST00000590630 POLRMTO00411 1230 aaKnown RBP15.43■□□□□ 0.06
LIG3-213ENST00000590630 MYL6BP14649 208 aa15.43■□□□□ 0.06
LIG3-213ENST00000590630 DDR1Q08345 913 aa15.43■□□□□ 0.06
LIG3-213ENST00000590630 NFIXQ14938 502 aa15.43■□□□□ 0.06
LIG3-213ENST00000590630 DUSP27Q5VZP5 1158 aa15.43■□□□□ 0.06
LIG3-213ENST00000590630 CLEC4GQ6UXB4 293 aa15.43■□□□□ 0.06
LIG3-213ENST00000590630 MIER1Q8N108 512 aa15.43■□□□□ 0.06
LIG3-213ENST00000590630 ZNF652Q9Y2D9 606 aa15.43■□□□□ 0.06
LIG3-213ENST00000590630 SALL2Q9Y467 1007 aaPredicted RBP15.43■□□□□ 0.06
LIG3-213ENST00000590630 PDIA6Q15084 440 aa15.42■□□□□ 0.06
LIG3-213ENST00000590630 HDGFL1Q5TGJ6 251 aa15.42■□□□□ 0.06
LIG3-213ENST00000590630 CHMP4AQ9BY43 222 aa15.42■□□□□ 0.06
LIG3-213ENST00000590630 CARMIL3Q8ND23 1372 aa15.41■□□□□ 0.06
LIG3-213ENST00000590630 KIAA1551Q9HCM1 1747 aa15.41■□□□□ 0.06
LIG3-213ENST00000590630 DCAF8L1A6NGE4 600 aa15.41■□□□□ 0.06
LIG3-213ENST00000590630 TBC1D9BQ66K14 1250 aa15.41■□□□□ 0.06
LIG3-213ENST00000590630 KIF6Q6ZMV9 814 aa15.41■□□□□ 0.06
LIG3-213ENST00000590630 NLGN2Q8NFZ4 835 aa15.41■□□□□ 0.06
LIG3-213ENST00000590630 TSR2Q969E8 191 aaKnown RBP15.41■□□□□ 0.06
LIG3-213ENST00000590630 DDX21Q9NR30 783 aaKnown RBP eCLIP15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms