RNA–Protein interactions for RNA: ENST00000589882.1

TREM1-206, Transcript of triggering receptor expressed on myeloid cells 1, human

Gene TREM1, Length 1,876 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TREM1-206	ENST00000589882	ZRANB2	O95218	330 aa	Known RBP eCLIP	13.95	□□□□□ -0.18
TREM1-206	ENST00000589882	MAP3K11	Q16584	847 aa		13.95	□□□□□ -0.18
TREM1-206	ENST00000589882	SUGP1	Q8IWZ8	645 aa	Known RBP	13.95	□□□□□ -0.18
TREM1-206	ENST00000589882	CNPY4	Q8N129	248 aa		13.95	□□□□□ -0.18
TREM1-206	ENST00000589882	PPM1E	Q8WY54	764 aa		13.95	□□□□□ -0.18
TREM1-206	ENST00000589882	CARD10	Q9BWT7	1032 aa		13.95	□□□□□ -0.18
TREM1-206	ENST00000589882	DCTPP1	Q9H773	170 aa		13.95	□□□□□ -0.18
TREM1-206	ENST00000589882	L2HGDH	Q9H9P8	463 aa		13.95	□□□□□ -0.18
TREM1-206	ENST00000589882	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	13.95	□□□□□ -0.18
TREM1-206	ENST00000589882	SWT1	Q5T5J6	900 aa	Known RBP	13.94	□□□□□ -0.18
TREM1-206	ENST00000589882	TDRD7	Q8NHU6	1098 aa	Known RBP	13.94	□□□□□ -0.18
TREM1-206	ENST00000589882	IL17RA	Q96F46	866 aa		13.94	□□□□□ -0.18
TREM1-206	ENST00000589882	UBXN6	Q9BZV1	441 aa		13.94	□□□□□ -0.18
TREM1-206	ENST00000589882	CLIP2	Q9UDT6	1046 aa		13.94	□□□□□ -0.18
TREM1-206	ENST00000589882	ABCA8	O94911	1581 aa		13.94	□□□□□ -0.18
TREM1-206	ENST00000589882	POLR3G	O15318	223 aa	Predicted RBP	13.93	□□□□□ -0.18
TREM1-206	ENST00000589882	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.93	□□□□□ -0.18
TREM1-206	ENST00000589882	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.93	□□□□□ -0.18
TREM1-206	ENST00000589882	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.93	□□□□□ -0.18
TREM1-206	ENST00000589882	SIRT2	Q8IXJ6	389 aa		13.93	□□□□□ -0.18
TREM1-206	ENST00000589882	SSH2	Q76I76	1423 aa		13.93	□□□□□ -0.18
TREM1-206	ENST00000589882	NSD3	Q9BZ95	1437 aa		13.93	□□□□□ -0.18
TREM1-206	ENST00000589882	GYS2	P54840	703 aa		13.93	□□□□□ -0.18
TREM1-206	ENST00000589882	SATB1	Q01826	763 aa		13.93	□□□□□ -0.18
TREM1-206	ENST00000589882	TYRO3	Q06418	890 aa		13.93	□□□□□ -0.18
TREM1-206	ENST00000589882	GPATCH11	Q8N954	259 aa		13.93	□□□□□ -0.18
TREM1-206	ENST00000589882	CACTIN	Q8WUQ7	758 aa	Known RBP	13.93	□□□□□ -0.18
TREM1-206	ENST00000589882	SMARCE1	Q969G3	411 aa		13.93	□□□□□ -0.18
TREM1-206	ENST00000589882	MLEC	Q14165	292 aa		13.92	□□□□□ -0.18
TREM1-206	ENST00000589882	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	13.92	□□□□□ -0.18
TREM1-206	ENST00000589882	FOXD4L3	Q6VB84	417 aa	Predicted RBP	13.92	□□□□□ -0.18
TREM1-206	ENST00000589882	LEKR1	Q6ZMV7	388 aa		13.92	□□□□□ -0.18
TREM1-206	ENST00000589882	RPAIN	Q86UA6	219 aa		13.92	□□□□□ -0.18
TREM1-206	ENST00000589882	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.92	□□□□□ -0.18
TREM1-206	ENST00000589882	LCMT1	Q9UIC8	334 aa		13.92	□□□□□ -0.18
TREM1-206	ENST00000589882	KCNG1	Q9UIX4	513 aa		13.92	□□□□□ -0.18
TREM1-206	ENST00000589882	NSD2	O96028	1365 aa		13.92	□□□□□ -0.18
TREM1-206	ENST00000589882	SBNO2	Q9Y2G9	1366 aa		13.92	□□□□□ -0.18
TREM1-206	ENST00000589882	FAM135B	Q49AJ0	1406 aa		13.91	□□□□□ -0.18
TREM1-206	ENST00000589882	TMPO	P42166	694 aa	Known RBP	13.91	□□□□□ -0.18
TREM1-206	ENST00000589882	MTHFS	P49914	203 aa		13.91	□□□□□ -0.18
TREM1-206	ENST00000589882	LRRC8A	Q8IWT6	810 aa		13.91	□□□□□ -0.18
TREM1-206	ENST00000589882	DRC1	Q96MC2	740 aa		13.91	□□□□□ -0.18
TREM1-206	ENST00000589882	MRVI1	Q9Y6F6	885 aa		13.91	□□□□□ -0.18
TREM1-206	ENST00000589882	ABCC4	O15439	1325 aa		13.91	□□□□□ -0.18
TREM1-206	ENST00000589882	EPB41L2	O43491	1005 aa	Known RBP	13.91	□□□□□ -0.18
TREM1-206	ENST00000589882	ACTN2	P35609	894 aa		13.91	□□□□□ -0.18
TREM1-206	ENST00000589882	DHX8	Q14562	1220 aa	Known RBP	13.91	□□□□□ -0.18
TREM1-206	ENST00000589882	ARHGAP29	Q52LW3	1261 aa		13.91	□□□□□ -0.18
TREM1-206	ENST00000589882	MCTP2	Q6DN12	878 aa		13.91	□□□□□ -0.18
TREM1-206	ENST00000589882	SRRT	Q9BXP5	876 aa	Known RBP	13.91	□□□□□ -0.18
TREM1-206	ENST00000589882	NUP62CL	Q9H1M0	184 aa		13.91	□□□□□ -0.18
TREM1-206	ENST00000589882	C1orf115	Q9H7X2	142 aa		13.91	□□□□□ -0.18
TREM1-206	ENST00000589882	MED4	Q9NPJ6	270 aa		13.91	□□□□□ -0.18
TREM1-206	ENST00000589882	MAST1	Q9Y2H9	1570 aa		13.9	□□□□□ -0.18
TREM1-206	ENST00000589882	FIBP	O43427	364 aa		13.9	□□□□□ -0.18
TREM1-206	ENST00000589882	F13A1	P00488	732 aa		13.9	□□□□□ -0.18
TREM1-206	ENST00000589882	HSP90B1	P14625	803 aa	Known RBP	13.9	□□□□□ -0.18
TREM1-206	ENST00000589882	OAS2	P29728	719 aa	Known RBP	13.9	□□□□□ -0.18
TREM1-206	ENST00000589882	GSC	P56915	257 aa	Predicted RBP	13.9	□□□□□ -0.18
TREM1-206	ENST00000589882	CCAR2	Q8N163	923 aa	Known RBP	13.9	□□□□□ -0.18
TREM1-206	ENST00000589882	CXorf56	Q9H5V9	222 aa		13.9	□□□□□ -0.18
TREM1-206	ENST00000589882	CBX8	Q9HC52	389 aa		13.9	□□□□□ -0.18
TREM1-206	ENST00000589882	TOMM22	Q9NS69	142 aa		13.9	□□□□□ -0.18
TREM1-206	ENST00000589882	NRBP1	Q9UHY1	535 aa		13.9	□□□□□ -0.18
TREM1-206	ENST00000589882	AATK	Q6ZMQ8	1374 aa		13.9	□□□□□ -0.18
TREM1-206	ENST00000589882	SKIL	P12757	684 aa		13.89	□□□□□ -0.19
TREM1-206	ENST00000589882	ST5	P78524	1137 aa		13.89	□□□□□ -0.19
TREM1-206	ENST00000589882	ERCC6L	Q2NKX8	1250 aa		13.89	□□□□□ -0.19
TREM1-206	ENST00000589882	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.89	□□□□□ -0.19
TREM1-206	ENST00000589882	SARM1	Q6SZW1	724 aa		13.89	□□□□□ -0.19
TREM1-206	ENST00000589882	LUZP1	Q86V48	1076 aa		13.89	□□□□□ -0.19
TREM1-206	ENST00000589882	MRFAP1L1	Q96HT8	127 aa		13.89	□□□□□ -0.19
TREM1-206	ENST00000589882	CEP89	Q96ST8	783 aa		13.89	□□□□□ -0.19
TREM1-206	ENST00000589882	TRIM35	Q9UPQ4	493 aa		13.89	□□□□□ -0.19
TREM1-206	ENST00000589882	STX6	O43752	255 aa		13.89	□□□□□ -0.19
TREM1-206	ENST00000589882	RPS6KA5	O75582	802 aa		13.89	□□□□□ -0.19
TREM1-206	ENST00000589882	UBXN4	Q92575	508 aa		13.89	□□□□□ -0.19
TREM1-206	ENST00000589882	API5	Q9BZZ5	524 aa	Known RBP	13.89	□□□□□ -0.19
TREM1-206	ENST00000589882	ORC3	Q9UBD5	711 aa	Predicted RBP	13.89	□□□□□ -0.19
TREM1-206	ENST00000589882	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
TREM1-206	ENST00000589882	CD109	Q6YHK3	1445 aa		13.88	□□□□□ -0.19
TREM1-206	ENST00000589882	CCDC196	A0A1B0GTZ2	297 aa		13.88	□□□□□ -0.19
TREM1-206	ENST00000589882	CP	P00450	1065 aa		13.88	□□□□□ -0.19
TREM1-206	ENST00000589882	SNW1	Q13573	536 aa	Known RBP	13.88	□□□□□ -0.19
TREM1-206	ENST00000589882	ZRSR1	Q15695	479 aa	Known RBP	13.88	□□□□□ -0.19
TREM1-206	ENST00000589882	CCDC93	Q567U6	631 aa		13.88	□□□□□ -0.19
TREM1-206	ENST00000589882	HSP90AB3P	Q58FF7	597 aa		13.88	□□□□□ -0.19
TREM1-206	ENST00000589882	CCDC158	Q5M9N0	1113 aa		13.88	□□□□□ -0.19
TREM1-206	ENST00000589882	MKRN1	Q9UHC7	482 aa	Known RBP	13.88	□□□□□ -0.19
TREM1-206	ENST00000589882	PRR29	P0C7W0	189 aa		13.87	□□□□□ -0.19
TREM1-206	ENST00000589882	CAST	P20810	708 aa	Known RBP	13.87	□□□□□ -0.19
TREM1-206	ENST00000589882	CALR	P27797	417 aa	Known RBP	13.87	□□□□□ -0.19
TREM1-206	ENST00000589882	GSDMD	P57764	484 aa		13.87	□□□□□ -0.19
TREM1-206	ENST00000589882	SMC1A	Q14683	1233 aa	Known RBP	13.87	□□□□□ -0.19
TREM1-206	ENST00000589882	MMS22L	Q6ZRQ5	1243 aa		13.87	□□□□□ -0.19
TREM1-206	ENST00000589882	PACS2	Q86VP3	889 aa		13.87	□□□□□ -0.19
TREM1-206	ENST00000589882	MYO3A	Q8NEV4	1616 aa		13.87	□□□□□ -0.19
TREM1-206	ENST00000589882	PTPRT	O14522	1441 aa		13.87	□□□□□ -0.19
TREM1-206	ENST00000589882	ATP6V1A	P38606	617 aa		13.87	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms