RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 ADAMTS7Q9UKP4 1686 aa5.89□□□□□ -1.47
LIG3-211ENST00000588713 LTBP1Q14766 1721 aa5.89□□□□□ -1.47
LIG3-211ENST00000588713 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.89□□□□□ -1.47
LIG3-211ENST00000588713 AOC2O75106 756 aa5.89□□□□□ -1.47
LIG3-211ENST00000588713 CYP4F22Q6NT55 531 aa5.89□□□□□ -1.47
LIG3-211ENST00000588713 SPNS2Q8IVW8 549 aa5.89□□□□□ -1.47
LIG3-211ENST00000588713 PIM2Q9P1W9 311 aa5.89□□□□□ -1.47
LIG3-211ENST00000588713 USP47Q96K76 1375 aa5.89□□□□□ -1.47
LIG3-211ENST00000588713 USP54Q70EL1 1684 aa5.88□□□□□ -1.47
LIG3-211ENST00000588713 CASP8AP2Q9UKL3 1982 aa5.88□□□□□ -1.47
LIG3-211ENST00000588713 FAM205CA6NFA0 338 aa5.88□□□□□ -1.47
LIG3-211ENST00000588713 WASLO00401 505 aaPredicted RBP5.88□□□□□ -1.47
LIG3-211ENST00000588713 IL2RBP14784 551 aa5.88□□□□□ -1.47
LIG3-211ENST00000588713 LMNB1P20700 586 aa5.88□□□□□ -1.47
LIG3-211ENST00000588713 ECE1P42892 770 aa5.88□□□□□ -1.47
LIG3-211ENST00000588713 MMRN1Q13201 1228 aa5.88□□□□□ -1.47
LIG3-211ENST00000588713 RGL3Q3MIN7 710 aa5.88□□□□□ -1.47
LIG3-211ENST00000588713 EAPPQ56P03 285 aaPredicted RBP5.88□□□□□ -1.47
LIG3-211ENST00000588713 CCDC87Q9NVE4 849 aa5.88□□□□□ -1.47
LIG3-211ENST00000588713 ACEP12821 1306 aa5.88□□□□□ -1.47
LIG3-211ENST00000588713 LY75O60449 1722 aa5.88□□□□□ -1.47
LIG3-211ENST00000588713 KCNA3P22001 575 aa5.87□□□□□ -1.47
LIG3-211ENST00000588713 LDHDQ86WU2 507 aa5.87□□□□□ -1.47
LIG3-211ENST00000588713 EFCAB3Q8N7B9 438 aa5.87□□□□□ -1.47
LIG3-211ENST00000588713 NUDT16Q96DE0 195 aaKnown RBP5.87□□□□□ -1.47
LIG3-211ENST00000588713 ANP32EQ9BTT0 268 aa5.87□□□□□ -1.47
LIG3-211ENST00000588713 NLRP2Q9NX02 1062 aa5.87□□□□□ -1.47
LIG3-211ENST00000588713 NSD2O96028 1365 aa5.87□□□□□ -1.47
LIG3-211ENST00000588713 C5P01031 1676 aa5.87□□□□□ -1.47
LIG3-211ENST00000588713 A0A0C4DFX4 3053 aa5.87□□□□□ -1.47
LIG3-211ENST00000588713 TIAM2Q8IVF5 1701 aa5.86□□□□□ -1.47
LIG3-211ENST00000588713 MEGF6O75095 1541 aa5.86□□□□□ -1.47
LIG3-211ENST00000588713 ANKRD36BQ8N2N9 1353 aa5.86□□□□□ -1.47
LIG3-211ENST00000588713 CA12O43570 354 aa5.86□□□□□ -1.47
LIG3-211ENST00000588713 ITGBL1O95965 494 aaPredicted RBP5.86□□□□□ -1.47
LIG3-211ENST00000588713 NLRP6P59044 892 aa5.86□□□□□ -1.47
LIG3-211ENST00000588713 ZNF710Q8N1W2 664 aa5.86□□□□□ -1.47
LIG3-211ENST00000588713 YTHDC1Q96MU7 727 aaKnown RBP5.86□□□□□ -1.47
LIG3-211ENST00000588713 HS3ST6Q96QI5 342 aa5.86□□□□□ -1.47
LIG3-211ENST00000588713 COL25A1Q9BXS0 654 aaPredicted RBP5.86□□□□□ -1.47
LIG3-211ENST00000588713 ARFGEF1Q9Y6D6 1849 aa5.85□□□□□ -1.47
LIG3-211ENST00000588713 THSD7BQ9C0I4 1608 aa5.85□□□□□ -1.47
LIG3-211ENST00000588713 KDM6AO15550 1401 aaPredicted RBP5.85□□□□□ -1.47
LIG3-211ENST00000588713 PIK3C2GO75747 1445 aa5.85□□□□□ -1.47
LIG3-211ENST00000588713 CPSF1Q10570 1443 aaKnown RBP5.85□□□□□ -1.47
LIG3-211ENST00000588713 DDNO94850 711 aaPredicted RBP5.85□□□□□ -1.47
LIG3-211ENST00000588713 CHRNA5P30532 468 aa5.85□□□□□ -1.47
LIG3-211ENST00000588713 MAP1SQ66K74 1059 aaPredicted RBP5.85□□□□□ -1.47
LIG3-211ENST00000588713 SUPT16HQ9Y5B9 1047 aaKnown RBP5.85□□□□□ -1.47
LIG3-211ENST00000588713 SBF1O95248 1867 aa5.85□□□□□ -1.47
LIG3-211ENST00000588713 KIF13BQ9NQT8 1826 aa5.85□□□□□ -1.47
LIG3-211ENST00000588713 TOGARAM1Q9Y4F4 1720 aa5.85□□□□□ -1.47
LIG3-211ENST00000588713 CUL9Q8IWT3 2517 aa5.84□□□□□ -1.47
LIG3-211ENST00000588713 POLR3AO14802 1390 aaPredicted RBP5.84□□□□□ -1.47
LIG3-211ENST00000588713 BRCA1P38398 1863 aaKnown RBP5.84□□□□□ -1.47
LIG3-211ENST00000588713 SSFA2P28290 1259 aa5.84□□□□□ -1.47
LIG3-211ENST00000588713 CFAP70Q5T0N1 1121 aa5.84□□□□□ -1.47
LIG3-211ENST00000588713 TRAK1Q9UPV9 953 aa5.84□□□□□ -1.47
LIG3-211ENST00000588713 PARP3Q9Y6F1 533 aa5.84□□□□□ -1.47
LIG3-211ENST00000588713 C4BP0C0L5 1744 aa5.84□□□□□ -1.47
LIG3-211ENST00000588713 DOT1LQ8TEK3 1739 aa5.84□□□□□ -1.47
LIG3-211ENST00000588713 NSD3Q9BZ95 1437 aa5.83□□□□□ -1.48
LIG3-211ENST00000588713 POTEB3A0JP26 581 aa5.83□□□□□ -1.48
LIG3-211ENST00000588713 IQCA1LA6NCM1 817 aa5.83□□□□□ -1.48
LIG3-211ENST00000588713 RIOK3O14730 519 aaKnown RBP5.83□□□□□ -1.48
LIG3-211ENST00000588713 GNPATO15228 680 aa5.83□□□□□ -1.48
LIG3-211ENST00000588713 HOXB3P14651 431 aaPredicted RBP5.83□□□□□ -1.48
LIG3-211ENST00000588713 COL9A1P20849 921 aa5.83□□□□□ -1.48
LIG3-211ENST00000588713 MAP2K2P36507 400 aa5.83□□□□□ -1.48
LIG3-211ENST00000588713 DOK7Q18PE1 504 aa5.83□□□□□ -1.48
LIG3-211ENST00000588713 ERFEQ4G0M1 354 aa5.83□□□□□ -1.48
LIG3-211ENST00000588713 CIAPIN1Q6FI81 312 aa5.83□□□□□ -1.48
LIG3-211ENST00000588713 POTEBQ6S5H4 581 aa5.83□□□□□ -1.48
LIG3-211ENST00000588713 CNTROBQ8N137 903 aa5.83□□□□□ -1.48
LIG3-211ENST00000588713 TAF1DQ9H5J8 278 aaPredicted RBP5.83□□□□□ -1.48
LIG3-211ENST00000588713 HPS5Q9UPZ3 1129 aa5.83□□□□□ -1.48
LIG3-211ENST00000588713 RGPD5Q99666 1765 aa5.83□□□□□ -1.48
LIG3-211ENST00000588713 PALLDQ8WX93 1383 aa5.82□□□□□ -1.48
LIG3-211ENST00000588713 SZT2Q5T011 3432 aa5.82□□□□□ -1.48
LIG3-211ENST00000588713 FMR1Q06787 632 aaKnown RBP eCLIP5.82□□□□□ -1.48
LIG3-211ENST00000588713 ARHGEF25Q86VW2 580 aa5.82□□□□□ -1.48
LIG3-211ENST00000588713 C14orf93Q9H972 538 aaKnown RBP5.82□□□□□ -1.48
LIG3-211ENST00000588713 RAPGEFL1Q9UHV5 662 aa5.82□□□□□ -1.48
LIG3-211ENST00000588713 SLIT3O75094 1523 aa5.82□□□□□ -1.48
LIG3-211ENST00000588713 RIMBP2O15034 1052 aa5.81□□□□□ -1.48
LIG3-211ENST00000588713 HMGB2P26583 209 aaKnown RBP5.81□□□□□ -1.48
LIG3-211ENST00000588713 BRPF1P55201 1214 aaPredicted RBP5.81□□□□□ -1.48
LIG3-211ENST00000588713 TMF1P82094 1093 aa5.81□□□□□ -1.48
LIG3-211ENST00000588713 NBPF1Q3BBV0 1214 aa5.81□□□□□ -1.48
LIG3-211ENST00000588713 KRTAP3-3Q9BYR6 98 aa5.81□□□□□ -1.48
LIG3-211ENST00000588713 KRTAP3-2Q9BYR7 98 aa5.81□□□□□ -1.48
LIG3-211ENST00000588713 BCL11AQ9H165 835 aa5.81□□□□□ -1.48
LIG3-211ENST00000588713 PRDM6Q9NQX0 595 aa5.81□□□□□ -1.48
LIG3-211ENST00000588713 DDX21Q9NR30 783 aaKnown RBP eCLIP5.81□□□□□ -1.48
LIG3-211ENST00000588713 COL6A3P12111 3177 aa5.81□□□□□ -1.48
LIG3-211ENST00000588713 C4AP0C0L4 1744 aa5.8□□□□□ -1.48
LIG3-211ENST00000588713 UBR3Q6ZT12 1888 aa5.8□□□□□ -1.48
LIG3-211ENST00000588713 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.8□□□□□ -1.48
LIG3-211ENST00000588713 NFKBIEO00221 500 aa5.8□□□□□ -1.48
LIG3-211ENST00000588713 HOXB1P14653 301 aaPredicted RBP5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 84.3 ms