RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 CYP19A1P11511 503 aaPredicted RBP25.63■■□□□ 1.69
SS18-209ENST00000578595 CCDC184Q52MB2 194 aa25.63■■□□□ 1.69
SS18-209ENST00000578595 MIS18AQ9NYP9 233 aa25.63■■□□□ 1.69
SS18-209ENST00000578595 ZNF330Q9Y3S2 320 aaPredicted RBP25.63■■□□□ 1.69
SS18-209ENST00000578595 LAMB4A4D0S4 1761 aa25.63■■□□□ 1.69
SS18-209ENST00000578595 ARHGEF1Q92888 912 aaKnown RBP25.62■■□□□ 1.69
SS18-209ENST00000578595 CANXP27824 592 aaKnown RBP25.61■■□□□ 1.69
SS18-209ENST00000578595 INTS5Q6P9B9 1019 aaKnown RBP25.61■■□□□ 1.69
SS18-209ENST00000578595 ZBTB1Q9Y2K1 713 aa25.61■■□□□ 1.69
SS18-209ENST00000578595 PNISRQ8TF01 805 aaKnown RBP25.6■■□□□ 1.69
SS18-209ENST00000578595 TEX13AQ9BXU3 409 aaPredicted RBP25.6■■□□□ 1.69
SS18-209ENST00000578595 COL15A1P39059 1388 aa25.58■■□□□ 1.69
SS18-209ENST00000578595 DCAF8L1A6NGE4 600 aa25.58■■□□□ 1.69
SS18-209ENST00000578595 NPM2Q86SE8 214 aaKnown RBP25.58■■□□□ 1.69
SS18-209ENST00000578595 SYT17Q9BSW7 474 aa25.57■■□□□ 1.68
SS18-209ENST00000578595 SRP68Q9UHB9 627 aaKnown RBP25.57■■□□□ 1.68
SS18-209ENST00000578595 SOS1Q07889 1333 aaPredicted RBP25.57■■□□□ 1.68
SS18-209ENST00000578595 ZPR1O75312 459 aa25.56■■□□□ 1.68
SS18-209ENST00000578595 TSPYL4Q9UJ04 414 aa25.56■■□□□ 1.68
SS18-209ENST00000578595 SNRPA1P09661 255 aaKnown RBP25.55■■□□□ 1.68
SS18-209ENST00000578595 LAS1LQ9Y4W2 734 aaKnown RBP25.55■■□□□ 1.68
SS18-209ENST00000578595 PRAMEF22A3QJZ6 481 aa25.54■■□□□ 1.68
SS18-209ENST00000578595 APAF1O14727 1248 aa25.54■■□□□ 1.68
SS18-209ENST00000578595 MMP10P09238 476 aa25.54■■□□□ 1.68
SS18-209ENST00000578595 NLGN1Q8N2Q7 840 aa25.54■■□□□ 1.68
SS18-209ENST00000578595 USP42Q9H9J4 1324 aaKnown RBP25.54■■□□□ 1.68
SS18-209ENST00000578595 GYS1P13807 737 aa25.53■■□□□ 1.68
SS18-209ENST00000578595 A1BGP04217 495 aa25.52■■□□□ 1.68
SS18-209ENST00000578595 USP16Q9Y5T5 823 aa25.52■■□□□ 1.68
SS18-209ENST00000578595 SCN7AQ01118 1682 aa25.52■■□□□ 1.68
SS18-209ENST00000578595 SENP3-EIF4A1A0A087X0R7 540 aa25.51■■□□□ 1.67
SS18-209ENST00000578595 PIP4K2AP48426 406 aaPredicted RBP25.51■■□□□ 1.67
SS18-209ENST00000578595 USPL1Q5W0Q7 1092 aa25.51■■□□□ 1.67
SS18-209ENST00000578595 PELP1Q8IZL8 1130 aaKnown RBP25.5■■□□□ 1.67
SS18-209ENST00000578595 A0A087WZG4 1122 aa25.49■■□□□ 1.67
SS18-209ENST00000578595 TRIM35Q9UPQ4 493 aa25.49■■□□□ 1.67
SS18-209ENST00000578595 PARP3Q9Y6F1 533 aa25.49■■□□□ 1.67
SS18-209ENST00000578595 BCORQ6W2J9 1755 aa25.49■■□□□ 1.67
SS18-209ENST00000578595 EIF4A1P60842 406 aaKnown RBP25.48■■□□□ 1.67
SS18-209ENST00000578595 NLGN2Q8NFZ4 835 aa25.48■■□□□ 1.67
SS18-209ENST00000578595 AFDNP55196 1824 aaKnown RBP25.47■■□□□ 1.67
SS18-209ENST00000578595 IL6STP40189 918 aaPredicted RBP25.47■■□□□ 1.67
SS18-209ENST00000578595 FKBP8Q14318 412 aa25.47■■□□□ 1.67
SS18-209ENST00000578595 NARFQ9UHQ1 456 aa25.47■■□□□ 1.67
SS18-209ENST00000578595 EIF5P55010 431 aaKnown RBP25.46■■□□□ 1.67
SS18-209ENST00000578595 FAM9BQ8IZU0 186 aa25.45■■□□□ 1.66
SS18-209ENST00000578595 TBC1D2BQ9UPU7 963 aa25.45■■□□□ 1.66
SS18-209ENST00000578595 N4BP2Q86UW6 1770 aaPredicted RBP25.45■■□□□ 1.66
SS18-209ENST00000578595 KIF13BQ9NQT8 1826 aa25.44■■□□□ 1.66
SS18-209ENST00000578595 GIGYF1O75420 1035 aaPredicted RBP25.44■■□□□ 1.66
SS18-209ENST00000578595 BICDL1Q6ZP65 573 aa25.43■■□□□ 1.66
SS18-209ENST00000578595 CD2APQ9Y5K6 639 aa25.43■■□□□ 1.66
SS18-209ENST00000578595 CALD1Q05682 793 aaKnown RBP25.42■■□□□ 1.66
SS18-209ENST00000578595 GPR162Q16538 588 aa25.42■■□□□ 1.66
SS18-209ENST00000578595 DZIP3Q86Y13 1208 aaKnown RBP25.42■■□□□ 1.66
SS18-209ENST00000578595 BABAM1Q9NWV8 329 aa25.42■■□□□ 1.66
SS18-209ENST00000578595 NGEFQ8N5V2 710 aa25.41■■□□□ 1.66
SS18-209ENST00000578595 CHD4Q14839 1912 aa25.4■■□□□ 1.66
SS18-209ENST00000578595 EIF2S2P20042 333 aaKnown RBP25.4■■□□□ 1.66
SS18-209ENST00000578595 WWC3Q9ULE0 1092 aa25.4■■□□□ 1.66
SS18-209ENST00000578595 DDR1Q08345 913 aa25.39■■□□□ 1.66
SS18-209ENST00000578595 NBPF26B4DH59 902 aa25.38■■□□□ 1.65
SS18-209ENST00000578595 MYL6BP14649 208 aa25.38■■□□□ 1.65
SS18-209ENST00000578595 NBPF10Q6P3W6 841 aaKnown RBP25.38■■□□□ 1.65
SS18-209ENST00000578595 NBPF15Q8N660 670 aa25.38■■□□□ 1.65
SS18-209ENST00000578595 NECTIN2Q92692 538 aa25.38■■□□□ 1.65
SS18-209ENST00000578595 SALL2Q9Y467 1007 aaPredicted RBP25.38■■□□□ 1.65
SS18-209ENST00000578595 C10orf71Q711Q0 1435 aa25.37■■□□□ 1.65
SS18-209ENST00000578595 NUP98P52948 1817 aa25.37■■□□□ 1.65
SS18-209ENST00000578595 CHL1O00533 1208 aa25.37■■□□□ 1.65
SS18-209ENST00000578595 NFIXQ14938 502 aa25.37■■□□□ 1.65
SS18-209ENST00000578595 BCL2L12Q9HB09 334 aa25.37■■□□□ 1.65
SS18-209ENST00000578595 NPHP1O15259 732 aa25.36■■□□□ 1.65
SS18-209ENST00000578595 CFAP44Q96MT7 982 aa25.36■■□□□ 1.65
SS18-209ENST00000578595 KIAA1551Q9HCM1 1747 aa25.36■■□□□ 1.65
SS18-209ENST00000578595 POLRMTO00411 1230 aaKnown RBP25.35■■□□□ 1.65
SS18-209ENST00000578595 GNAI1P63096 354 aa25.35■■□□□ 1.65
SS18-209ENST00000578595 KRT24Q2M2I5 525 aa25.35■■□□□ 1.65
SS18-209ENST00000578595 CAMTA2O94983 1202 aa25.34■■□□□ 1.65
SS18-209ENST00000578595 TBC1D9BQ66K14 1250 aa25.34■■□□□ 1.65
SS18-209ENST00000578595 MBIPQ9NS73 344 aa25.34■■□□□ 1.65
SS18-209ENST00000578595 IFT57Q9NWB7 429 aa25.34■■□□□ 1.65
SS18-209ENST00000578595 ZNF652Q9Y2D9 606 aa25.34■■□□□ 1.65
SS18-209ENST00000578595 NRXN2Q9P2S2 1712 aa25.34■■□□□ 1.65
SS18-209ENST00000578595 TM4SF1P30408 202 aa25.33■■□□□ 1.65
SS18-209ENST00000578595 KIF6Q6ZMV9 814 aa25.33■■□□□ 1.65
SS18-209ENST00000578595 SERPINB2P05120 415 aa25.32■■□□□ 1.64
SS18-209ENST00000578595 PXDNLA1KZ92 1463 aa25.32■■□□□ 1.64
SS18-209ENST00000578595 BRCA1P38398 1863 aaKnown RBP25.32■■□□□ 1.64
SS18-209ENST00000578595 ERBB4Q15303 1308 aa25.31■■□□□ 1.64
SS18-209ENST00000578595 CARMIL3Q8ND23 1372 aa25.31■■□□□ 1.64
SS18-209ENST00000578595 SETDB2Q96T68 719 aa25.3■■□□□ 1.64
SS18-209ENST00000578595 A0A0G2JLW4 131 aa25.29■■□□□ 1.64
SS18-209ENST00000578595 ANXA1P04083 346 aa25.29■■□□□ 1.64
SS18-209ENST00000578595 HDGFL1Q5TGJ6 251 aa25.29■■□□□ 1.64
SS18-209ENST00000578595 CACNA1SQ13698 1873 aa25.28■■□□□ 1.64
SS18-209ENST00000578595 ANKRD31Q8N7Z5 1873 aa25.28■■□□□ 1.64
SS18-209ENST00000578595 TGFB2P61812 414 aa25.28■■□□□ 1.64
SS18-209ENST00000578595 WWC1Q8IX03 1113 aa25.28■■□□□ 1.64
SS18-209ENST00000578595 ELL2O00472 640 aaPredicted RBP25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms