RNA–Protein interactions for RNA: ENST00000575176.5

SMG6-216, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 557 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-216ENST00000575176 ADRA2BP18089 450 aa11.54□□□□□ -0.56
SMG6-216ENST00000575176 TMPOP42166 694 aaKnown RBP11.54□□□□□ -0.56
SMG6-216ENST00000575176 TEFQ10587 303 aa11.54□□□□□ -0.56
SMG6-216ENST00000575176 CCDC146Q8IYE0 955 aa11.54□□□□□ -0.56
SMG6-216ENST00000575176 ARHGEF1Q92888 912 aaKnown RBP11.54□□□□□ -0.56
SMG6-216ENST00000575176 BCL2L12Q9HB09 334 aa11.54□□□□□ -0.56
SMG6-216ENST00000575176 FLAD1Q8NFF5 587 aa11.53□□□□□ -0.56
SMG6-216ENST00000575176 ARXQ96QS3 562 aa11.53□□□□□ -0.56
SMG6-216ENST00000575176 CCDC87Q9NVE4 849 aa11.53□□□□□ -0.56
SMG6-216ENST00000575176 BTBD11A6QL63 1104 aa11.52□□□□□ -0.57
SMG6-216ENST00000575176 EIF5P55010 431 aaKnown RBP11.52□□□□□ -0.57
SMG6-216ENST00000575176 NLGN2Q8NFZ4 835 aa11.52□□□□□ -0.57
SMG6-216ENST00000575176 SYT17Q9BSW7 474 aa11.52□□□□□ -0.57
SMG6-216ENST00000575176 SRP68Q9UHB9 627 aaKnown RBP11.52□□□□□ -0.57
SMG6-216ENST00000575176 CACNA1SQ13698 1873 aa11.52□□□□□ -0.57
SMG6-216ENST00000575176 DDR1Q08345 913 aa11.51□□□□□ -0.57
SMG6-216ENST00000575176 PNISRQ8TF01 805 aaKnown RBP11.51□□□□□ -0.57
SMG6-216ENST00000575176 RUNDC1Q96C34 613 aa11.51□□□□□ -0.57
SMG6-216ENST00000575176 RTCBQ9Y3I0 505 aaKnown RBP11.51□□□□□ -0.57
SMG6-216ENST00000575176 MAPK8IP3Q9UPT6 1336 aa11.51□□□□□ -0.57
SMG6-216ENST00000575176 LAMB2P55268 1798 aa11.51□□□□□ -0.57
SMG6-216ENST00000575176 NBPF26B4DH59 902 aa11.5□□□□□ -0.57
SMG6-216ENST00000575176 FKBP8Q14318 412 aa11.5□□□□□ -0.57
SMG6-216ENST00000575176 NBPF10Q6P3W6 841 aaKnown RBP11.5□□□□□ -0.57
SMG6-216ENST00000575176 LRP10Q7Z4F1 713 aa11.5□□□□□ -0.57
SMG6-216ENST00000575176 NBPF15Q8N660 670 aa11.5□□□□□ -0.57
SMG6-216ENST00000575176 FMNL2Q96PY5 1086 aa11.5□□□□□ -0.57
SMG6-216ENST00000575176 MIS18AQ9NYP9 233 aa11.5□□□□□ -0.57
SMG6-216ENST00000575176 RRP7AQ9Y3A4 280 aaKnown RBP11.5□□□□□ -0.57
SMG6-216ENST00000575176 USP16Q9Y5T5 823 aa11.5□□□□□ -0.57
SMG6-216ENST00000575176 CARMIL3Q8ND23 1372 aa11.5□□□□□ -0.57
SMG6-216ENST00000575176 HMGB2P26583 209 aaKnown RBP11.49□□□□□ -0.57
SMG6-216ENST00000575176 EIF4A1P60842 406 aaKnown RBP11.49□□□□□ -0.57
SMG6-216ENST00000575176 TAF7Q15545 349 aaPredicted RBP11.49□□□□□ -0.57
SMG6-216ENST00000575176 TTC5Q8N0Z6 440 aa11.49□□□□□ -0.57
SMG6-216ENST00000575176 A1BGP04217 495 aa11.48□□□□□ -0.57
SMG6-216ENST00000575176 MMP10P09238 476 aa11.48□□□□□ -0.57
SMG6-216ENST00000575176 ZNF853P0CG23 659 aa11.48□□□□□ -0.57
SMG6-216ENST00000575176 RIPK4P57078 832 aa11.48□□□□□ -0.57
SMG6-216ENST00000575176 TRAPPC3LQ5T215 181 aa11.48□□□□□ -0.57
SMG6-216ENST00000575176 RTF1Q92541 710 aaKnown RBP11.48□□□□□ -0.57
SMG6-216ENST00000575176 DDX60Q8IY21 1712 aaKnown RBP11.47□□□□□ -0.57
SMG6-216ENST00000575176 POLRMTO00411 1230 aaKnown RBP11.47□□□□□ -0.57
SMG6-216ENST00000575176 GIGYF1O75420 1035 aaPredicted RBP11.47□□□□□ -0.57
SMG6-216ENST00000575176 TM4SF1P30408 202 aa11.47□□□□□ -0.57
SMG6-216ENST00000575176 PIP4K2AP48426 406 aaPredicted RBP11.47□□□□□ -0.57
SMG6-216ENST00000575176 WDR43Q15061 677 aaKnown RBP eCLIP11.47□□□□□ -0.57
SMG6-216ENST00000575176 PPP1R1BQ9UD71 204 aaPredicted RBP11.47□□□□□ -0.57
SMG6-216ENST00000575176 NARFQ9UHQ1 456 aa11.47□□□□□ -0.57
SMG6-216ENST00000575176 SBF1O95248 1867 aa11.46□□□□□ -0.57
SMG6-216ENST00000575176 CHL1O00533 1208 aa11.46□□□□□ -0.57
SMG6-216ENST00000575176 MSH5O43196 834 aa11.46□□□□□ -0.57
SMG6-216ENST00000575176 CAMTA2O94983 1202 aa11.46□□□□□ -0.57
SMG6-216ENST00000575176 POLD1P28340 1107 aa11.46□□□□□ -0.57
SMG6-216ENST00000575176 IL6STP40189 918 aaPredicted RBP11.46□□□□□ -0.57
SMG6-216ENST00000575176 KRT24Q2M2I5 525 aa11.46□□□□□ -0.57
SMG6-216ENST00000575176 USPL1Q5W0Q7 1092 aa11.46□□□□□ -0.57
SMG6-216ENST00000575176 PNNQ9H307 717 aaKnown RBP11.46□□□□□ -0.57
SMG6-216ENST00000575176 FER1L6Q2WGJ9 1857 aa11.45□□□□□ -0.58
SMG6-216ENST00000575176 APAF1O14727 1248 aa11.45□□□□□ -0.58
SMG6-216ENST00000575176 SNRPA1P09661 255 aaKnown RBP11.45□□□□□ -0.58
SMG6-216ENST00000575176 YBX3P16989 372 aaKnown RBP eCLIP11.45□□□□□ -0.58
SMG6-216ENST00000575176 PDIA6Q15084 440 aa11.45□□□□□ -0.58
SMG6-216ENST00000575176 BABAM1Q9NWV8 329 aa11.45□□□□□ -0.58
SMG6-216ENST00000575176 CD2APQ9Y5K6 639 aa11.45□□□□□ -0.58
SMG6-216ENST00000575176 ATP10DQ9P241 1426 aa11.44□□□□□ -0.58
SMG6-216ENST00000575176 STARD3NLO95772 234 aa11.44□□□□□ -0.58
SMG6-216ENST00000575176 CANXP27824 592 aaKnown RBP11.44□□□□□ -0.58
SMG6-216ENST00000575176 RFC4P35249 363 aa11.44□□□□□ -0.58
SMG6-216ENST00000575176 NFIXQ14938 502 aa11.44□□□□□ -0.58
SMG6-216ENST00000575176 TEX13AQ9BXU3 409 aaPredicted RBP11.44□□□□□ -0.58
SMG6-216ENST00000575176 CACNA1FO60840 1977 aa11.44□□□□□ -0.58
SMG6-216ENST00000575176 TIAM2Q8IVF5 1701 aa11.43□□□□□ -0.58
SMG6-216ENST00000575176 COL4A1P02462 1669 aa11.43□□□□□ -0.58
SMG6-216ENST00000575176 LMOD3Q0VAK6 560 aa11.43□□□□□ -0.58
SMG6-216ENST00000575176 PROSER3Q2NL68 480 aa11.43□□□□□ -0.58
SMG6-216ENST00000575176 NLGN1Q8N2Q7 840 aa11.43□□□□□ -0.58
SMG6-216ENST00000575176 MRS2Q9HD23 443 aa11.43□□□□□ -0.58
SMG6-216ENST00000575176 SLX4Q8IY92 1834 aa11.42□□□□□ -0.58
SMG6-216ENST00000575176 ANP32CO43423 234 aa11.42□□□□□ -0.58
SMG6-216ENST00000575176 KCNA3P22001 575 aa11.42□□□□□ -0.58
SMG6-216ENST00000575176 NEUROD2Q15784 382 aa11.42□□□□□ -0.58
SMG6-216ENST00000575176 MBIPQ9NS73 344 aa11.42□□□□□ -0.58
SMG6-216ENST00000575176 TSPYL4Q9UJ04 414 aa11.42□□□□□ -0.58
SMG6-216ENST00000575176 CCDC88AQ3V6T2 1871 aa11.42□□□□□ -0.58
SMG6-216ENST00000575176 ADCY9O60503 1353 aa11.41□□□□□ -0.58
SMG6-216ENST00000575176 ERBB4Q15303 1308 aa11.41□□□□□ -0.58
SMG6-216ENST00000575176 ZNF521Q96K83 1311 aa11.41□□□□□ -0.58
SMG6-216ENST00000575176 LRRC37AA6NMS7 1700 aa11.41□□□□□ -0.58
SMG6-216ENST00000575176 DICER1Q9UPY3 1922 aaKnown RBP11.41□□□□□ -0.58
SMG6-216ENST00000575176 NEFMP07197 916 aa11.41□□□□□ -0.58
SMG6-216ENST00000575176 CCDC27Q2M243 656 aa11.41□□□□□ -0.58
SMG6-216ENST00000575176 NCBP3Q53F19 620 aaKnown RBP11.41□□□□□ -0.58
SMG6-216ENST00000575176 TBC1D9BQ66K14 1250 aa11.41□□□□□ -0.58
SMG6-216ENST00000575176 CFAP44Q96MT7 982 aa11.41□□□□□ -0.58
SMG6-216ENST00000575176 RIC1Q4ADV7 1423 aa11.41□□□□□ -0.58
SMG6-216ENST00000575176 SNED1Q8TER0 1413 aa11.41□□□□□ -0.58
SMG6-216ENST00000575176 RGL2O15211 777 aa11.4□□□□□ -0.58
SMG6-216ENST00000575176 TBC1D2BQ9UPU7 963 aa11.4□□□□□ -0.58
SMG6-216ENST00000575176 ABCC12Q96J65 1359 aa11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms