RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 GPBP1L1Q9HC44 474 aaPredicted RBP20.77■□□□□ 0.92
CHD3-215ENST00000572750 MIS18AQ9NYP9 233 aa20.77■□□□□ 0.92
CHD3-215ENST00000572750 HEG1Q9ULI3 1381 aa20.76■□□□□ 0.91
CHD3-215ENST00000572750 GNPATO15228 680 aa20.76■□□□□ 0.91
CHD3-215ENST00000572750 GRIN3BO60391 1043 aa20.76■□□□□ 0.91
CHD3-215ENST00000572750 TAF7Q15545 349 aaPredicted RBP20.76■□□□□ 0.91
CHD3-215ENST00000572750 SMIM5Q71RC9 77 aa20.76■□□□□ 0.91
CHD3-215ENST00000572750 DNAJC10Q8IXB1 793 aa20.76■□□□□ 0.91
CHD3-215ENST00000572750 ZNF526Q8TF50 670 aaPredicted RBP20.76■□□□□ 0.91
CHD3-215ENST00000572750 SLC16A10Q8TF71 515 aa20.76■□□□□ 0.91
CHD3-215ENST00000572750 CNTNAP4Q9C0A0 1308 aa20.76■□□□□ 0.91
CHD3-215ENST00000572750 PHF14O94880 888 aa20.75■□□□□ 0.91
CHD3-215ENST00000572750 POLD1P28340 1107 aa20.75■□□□□ 0.91
CHD3-215ENST00000572750 DNAJC5GQ8N7S2 189 aa20.75■□□□□ 0.91
CHD3-215ENST00000572750 CRKLP46109 303 aaKnown RBP20.74■□□□□ 0.91
CHD3-215ENST00000572750 FMNL2Q96PY5 1086 aa20.74■□□□□ 0.91
CHD3-215ENST00000572750 HMGB2P26583 209 aaKnown RBP20.73■□□□□ 0.91
CHD3-215ENST00000572750 VSIG10Q8N0Z9 540 aa20.73■□□□□ 0.91
CHD3-215ENST00000572750 COL23A1Q86Y22 540 aaPredicted RBP20.72■□□□□ 0.91
CHD3-215ENST00000572750 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.71■□□□□ 0.91
CHD3-215ENST00000572750 CCER2I3L3R5 266 aa20.71■□□□□ 0.91
CHD3-215ENST00000572750 MSH5O43196 834 aa20.71■□□□□ 0.91
CHD3-215ENST00000572750 CYP19A1P11511 503 aaPredicted RBP20.71■□□□□ 0.91
CHD3-215ENST00000572750 MIER1Q8N108 512 aa20.71■□□□□ 0.91
CHD3-215ENST00000572750 TSPYL4Q9UJ04 414 aa20.71■□□□□ 0.91
CHD3-215ENST00000572750 PRAMEF22A3QJZ6 481 aa20.7■□□□□ 0.9
CHD3-215ENST00000572750 SSFA2P28290 1259 aa20.7■□□□□ 0.9
CHD3-215ENST00000572750 KIF3CO14782 793 aa20.69■□□□□ 0.9
CHD3-215ENST00000572750 COL13A1Q5TAT6 717 aaPredicted RBP20.69■□□□□ 0.9
CHD3-215ENST00000572750 RC3H1Q5TC82 1133 aaKnown RBP20.69■□□□□ 0.9
CHD3-215ENST00000572750 INTS5Q6P9B9 1019 aaKnown RBP20.69■□□□□ 0.9
CHD3-215ENST00000572750 CCDC87Q9NVE4 849 aa20.69■□□□□ 0.9
CHD3-215ENST00000572750 RTCBQ9Y3I0 505 aaKnown RBP20.69■□□□□ 0.9
CHD3-215ENST00000572750 ZBTB1Q9Y2K1 713 aa20.68■□□□□ 0.9
CHD3-215ENST00000572750 LAS1LQ9Y4W2 734 aaKnown RBP20.68■□□□□ 0.9
CHD3-215ENST00000572750 FLAD1Q8NFF5 587 aa20.67■□□□□ 0.9
CHD3-215ENST00000572750 RPS6KA4O75676 772 aa20.66■□□□□ 0.9
CHD3-215ENST00000572750 CAPN15O75808 1086 aa20.66■□□□□ 0.9
CHD3-215ENST00000572750 STARD3NLO95772 234 aa20.66■□□□□ 0.9
CHD3-215ENST00000572750 EIF4A1P60842 406 aaKnown RBP20.66■□□□□ 0.9
CHD3-215ENST00000572750 MSL1Q68DK7 614 aa20.66■□□□□ 0.9
CHD3-215ENST00000572750 SCN7AQ01118 1682 aa20.65■□□□□ 0.9
CHD3-215ENST00000572750 SOS1Q07889 1333 aaPredicted RBP20.65■□□□□ 0.9
CHD3-215ENST00000572750 SNRPA1P09661 255 aaKnown RBP20.65■□□□□ 0.9
CHD3-215ENST00000572750 SALL2Q9Y467 1007 aaPredicted RBP20.65■□□□□ 0.9
CHD3-215ENST00000572750 COL15A1P39059 1388 aa20.64■□□□□ 0.89
CHD3-215ENST00000572750 TEX13AQ9BXU3 409 aaPredicted RBP20.64■□□□□ 0.89
CHD3-215ENST00000572750 USP16Q9Y5T5 823 aa20.64■□□□□ 0.89
CHD3-215ENST00000572750 CHL1O00533 1208 aa20.63■□□□□ 0.89
CHD3-215ENST00000572750 ADRA2BP18089 450 aa20.63■□□□□ 0.89
CHD3-215ENST00000572750 CANXP27824 592 aaKnown RBP20.63■□□□□ 0.89
CHD3-215ENST00000572750 CCDC27Q2M243 656 aa20.63■□□□□ 0.89
CHD3-215ENST00000572750 TRAPPC3LQ5T215 181 aa20.63■□□□□ 0.89
CHD3-215ENST00000572750 BABAM1Q9NWV8 329 aa20.63■□□□□ 0.89
CHD3-215ENST00000572750 BCORQ6W2J9 1755 aa20.62■□□□□ 0.89
CHD3-215ENST00000572750 PIP4K2AP48426 406 aaPredicted RBP20.62■□□□□ 0.89
CHD3-215ENST00000572750 CALD1Q05682 793 aaKnown RBP20.62■□□□□ 0.89
CHD3-215ENST00000572750 WWC1Q8IX03 1113 aa20.62■□□□□ 0.89
CHD3-215ENST00000572750 ARHGEF1Q92888 912 aaKnown RBP20.62■□□□□ 0.89
CHD3-215ENST00000572750 CFAP44Q96MT7 982 aa20.62■□□□□ 0.89
CHD3-215ENST00000572750 A1BGP04217 495 aa20.61■□□□□ 0.89
CHD3-215ENST00000572750 APLP1P51693 650 aa20.61■□□□□ 0.89
CHD3-215ENST00000572750 KRT24Q2M2I5 525 aa20.61■□□□□ 0.89
CHD3-215ENST00000572750 MBIPQ9NS73 344 aa20.61■□□□□ 0.89
CHD3-215ENST00000572750 IFT57Q9NWB7 429 aa20.61■□□□□ 0.89
CHD3-215ENST00000572750 ZNF330Q9Y3S2 320 aaPredicted RBP20.61■□□□□ 0.89
CHD3-215ENST00000572750 ZNF853P0CG23 659 aa20.6■□□□□ 0.89
CHD3-215ENST00000572750 RFC4P35249 363 aa20.6■□□□□ 0.89
CHD3-215ENST00000572750 SRP68Q9UHB9 627 aaKnown RBP20.6■□□□□ 0.89
CHD3-215ENST00000572750 USP42Q9H9J4 1324 aaKnown RBP20.58■□□□□ 0.89
CHD3-215ENST00000572750 GNAI1P63096 354 aa20.58■□□□□ 0.89
CHD3-215ENST00000572750 EIF5P55010 431 aaKnown RBP20.57■□□□□ 0.88
CHD3-215ENST00000572750 NCBP3Q53F19 620 aaKnown RBP20.57■□□□□ 0.88
CHD3-215ENST00000572750 NBPF26B4DH59 902 aa20.56■□□□□ 0.88
CHD3-215ENST00000572750 GYS1P13807 737 aa20.56■□□□□ 0.88
CHD3-215ENST00000572750 IL6STP40189 918 aaPredicted RBP20.56■□□□□ 0.88
CHD3-215ENST00000572750 NBPF10Q6P3W6 841 aaKnown RBP20.56■□□□□ 0.88
CHD3-215ENST00000572750 NBPF15Q8N660 670 aa20.56■□□□□ 0.88
CHD3-215ENST00000572750 TSR2Q969E8 191 aaKnown RBP20.56■□□□□ 0.88
CHD3-215ENST00000572750 WWC3Q9ULE0 1092 aa20.56■□□□□ 0.88
CHD3-215ENST00000572750 CD2APQ9Y5K6 639 aa20.56■□□□□ 0.88
CHD3-215ENST00000572750 HTRA3P83110 453 aa20.55■□□□□ 0.88
CHD3-215ENST00000572750 PRELPP51888 382 aa20.54■□□□□ 0.88
CHD3-215ENST00000572750 USPL1Q5W0Q7 1092 aa20.54■□□□□ 0.88
CHD3-215ENST00000572750 IL16Q14005 1332 aa20.53■□□□□ 0.88
CHD3-215ENST00000572750 WDR90Q96KV7 1748 aa20.53■□□□□ 0.88
CHD3-215ENST00000572750 EIF2S2P20042 333 aaKnown RBP20.53■□□□□ 0.88
CHD3-215ENST00000572750 NECTIN2Q92692 538 aa20.53■□□□□ 0.88
CHD3-215ENST00000572750 ZPR1O75312 459 aa20.52■□□□□ 0.88
CHD3-215ENST00000572750 FKBP8Q14318 412 aa20.52■□□□□ 0.88
CHD3-215ENST00000572750 NARFQ9UHQ1 456 aa20.52■□□□□ 0.88
CHD3-215ENST00000572750 TBC1D2BQ9UPU7 963 aa20.52■□□□□ 0.88
CHD3-215ENST00000572750 FANCIQ9NVI1 1328 aa20.52■□□□□ 0.87
CHD3-215ENST00000572750 A0A087WZG4 1122 aa20.51■□□□□ 0.87
CHD3-215ENST00000572750 MMP10P09238 476 aa20.51■□□□□ 0.87
CHD3-215ENST00000572750 MYL6BP14649 208 aa20.51■□□□□ 0.87
CHD3-215ENST00000572750 DUSP27Q5VZP5 1158 aa20.51■□□□□ 0.87
CHD3-215ENST00000572750 WDR63Q8IWG1 891 aa20.51■□□□□ 0.87
CHD3-215ENST00000572750 NGEFQ8N5V2 710 aa20.51■□□□□ 0.87
CHD3-215ENST00000572750 ZNF521Q96K83 1311 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms