RNA–Protein interactions for RNA: ENST00000564260.1

RNF40-206, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 768 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-206ENST00000564260 GIGYF1O75420 1035 aaPredicted RBP21.72■■□□□ 1.07
RNF40-206ENST00000564260 ERBB4Q15303 1308 aa21.72■■□□□ 1.07
RNF40-206ENST00000564260 CASZ1Q86V15 1759 aa21.71■■□□□ 1.07
RNF40-206ENST00000564260 MIS18AQ9NYP9 233 aa21.71■■□□□ 1.07
RNF40-206ENST00000564260 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.7■■□□□ 1.06
RNF40-206ENST00000564260 TRAPPC3LQ5T215 181 aa21.7■■□□□ 1.06
RNF40-206ENST00000564260 INTS5Q6P9B9 1019 aaKnown RBP21.7■■□□□ 1.06
RNF40-206ENST00000564260 MTFR1LQ9H019 292 aa21.7■■□□□ 1.06
RNF40-206ENST00000564260 UBR3Q6ZT12 1888 aa21.69■■□□□ 1.06
RNF40-206ENST00000564260 IL6STP40189 918 aaPredicted RBP21.69■■□□□ 1.06
RNF40-206ENST00000564260 ZNF521Q96K83 1311 aa21.69■■□□□ 1.06
RNF40-206ENST00000564260 A0A087WZG4 1122 aa21.68■■□□□ 1.06
RNF40-206ENST00000564260 MBIPQ9NS73 344 aa21.68■■□□□ 1.06
RNF40-206ENST00000564260 RGL2O15211 777 aa21.67■■□□□ 1.06
RNF40-206ENST00000564260 COL23A1Q86Y22 540 aaPredicted RBP21.67■■□□□ 1.06
RNF40-206ENST00000564260 LAS1LQ9Y4W2 734 aaKnown RBP21.67■■□□□ 1.06
RNF40-206ENST00000564260 LAMB4A4D0S4 1761 aa21.66■■□□□ 1.06
RNF40-206ENST00000564260 NPM2Q86SE8 214 aaKnown RBP21.66■■□□□ 1.06
RNF40-206ENST00000564260 MYH16Q9H6N6 1097 aa21.66■■□□□ 1.06
RNF40-206ENST00000564260 SPON1Q9HCB6 807 aa21.66■■□□□ 1.06
RNF40-206ENST00000564260 ZBTB1Q9Y2K1 713 aa21.66■■□□□ 1.06
RNF40-206ENST00000564260 USP16Q9Y5T5 823 aa21.66■■□□□ 1.06
RNF40-206ENST00000564260 EIF5P55010 431 aaKnown RBP21.65■■□□□ 1.06
RNF40-206ENST00000564260 LRP5O75197 1615 aa21.65■■□□□ 1.06
RNF40-206ENST00000564260 TUBGCP6Q96RT7 1819 aa21.64■■□□□ 1.06
RNF40-206ENST00000564260 COL15A1P39059 1388 aa21.64■■□□□ 1.06
RNF40-206ENST00000564260 RFC4P35249 363 aa21.64■■□□□ 1.05
RNF40-206ENST00000564260 MYH14Q7Z406 1995 aaKnown RBP21.63■■□□□ 1.05
RNF40-206ENST00000564260 ARHGEF1Q92888 912 aaKnown RBP21.63■■□□□ 1.05
RNF40-206ENST00000564260 PHF14O94880 888 aa21.62■■□□□ 1.05
RNF40-206ENST00000564260 USP42Q9H9J4 1324 aaKnown RBP21.61■■□□□ 1.05
RNF40-206ENST00000564260 E9PSI1 815 aa21.61■■□□□ 1.05
RNF40-206ENST00000564260 MSH5O43196 834 aa21.61■■□□□ 1.05
RNF40-206ENST00000564260 GOLGA2Q08379 1002 aa21.61■■□□□ 1.05
RNF40-206ENST00000564260 AMIGO3Q86WK7 504 aa21.61■■□□□ 1.05
RNF40-206ENST00000564260 NLGN1Q8N2Q7 840 aa21.61■■□□□ 1.05
RNF40-206ENST00000564260 PRAMEF22A3QJZ6 481 aa21.6■■□□□ 1.05
RNF40-206ENST00000564260 A1BGP04217 495 aa21.6■■□□□ 1.05
RNF40-206ENST00000564260 CANXP27824 592 aaKnown RBP21.6■■□□□ 1.05
RNF40-206ENST00000564260 NARFQ9UHQ1 456 aa21.6■■□□□ 1.05
RNF40-206ENST00000564260 COL24A1Q17RW2 1714 aa21.6■■□□□ 1.05
RNF40-206ENST00000564260 FANCIQ9NVI1 1328 aa21.59■■□□□ 1.05
RNF40-206ENST00000564260 ZPR1O75312 459 aa21.59■■□□□ 1.05
RNF40-206ENST00000564260 POLD1P28340 1107 aa21.59■■□□□ 1.05
RNF40-206ENST00000564260 DUSP27Q5VZP5 1158 aa21.59■■□□□ 1.05
RNF40-206ENST00000564260 PDGFDQ9GZP0 370 aaPredicted RBP21.59■■□□□ 1.05
RNF40-206ENST00000564260 SALL2Q9Y467 1007 aaPredicted RBP21.59■■□□□ 1.05
RNF40-206ENST00000564260 ZBTB7AO95365 584 aa21.58■■□□□ 1.05
RNF40-206ENST00000564260 SGIP1Q9BQI5 828 aa21.58■■□□□ 1.05
RNF40-206ENST00000564260 HDGFL1Q5TGJ6 251 aa21.57■■□□□ 1.04
RNF40-206ENST00000564260 DBF4Q9UBU7 674 aaPredicted RBP21.57■■□□□ 1.04
RNF40-206ENST00000564260 NBPF26B4DH59 902 aa21.56■■□□□ 1.04
RNF40-206ENST00000564260 GYS1P13807 737 aa21.56■■□□□ 1.04
RNF40-206ENST00000564260 PTGER2P43116 358 aa21.56■■□□□ 1.04
RNF40-206ENST00000564260 NBPF10Q6P3W6 841 aaKnown RBP21.56■■□□□ 1.04
RNF40-206ENST00000564260 CLEC4GQ6UXB4 293 aa21.56■■□□□ 1.04
RNF40-206ENST00000564260 NBPF15Q8N660 670 aa21.56■■□□□ 1.04
RNF40-206ENST00000564260 DDX21Q9NR30 783 aaKnown RBP eCLIP21.56■■□□□ 1.04
RNF40-206ENST00000564260 C4AP0C0L4 1744 aa21.55■■□□□ 1.04
RNF40-206ENST00000564260 TSR2Q969E8 191 aaKnown RBP21.55■■□□□ 1.04
RNF40-206ENST00000564260 CCDC30Q5VVM6 783 aa21.54■■□□□ 1.04
RNF40-206ENST00000564260 ZNF652Q9Y2D9 606 aa21.54■■□□□ 1.04
RNF40-206ENST00000564260 SRCAPQ6ZRS2 3230 aa21.53■■□□□ 1.04
RNF40-206ENST00000564260 ERVV-1B6SEH8 477 aa21.53■■□□□ 1.04
RNF40-206ENST00000564260 EIF2S2P20042 333 aaKnown RBP21.53■■□□□ 1.04
RNF40-206ENST00000564260 TWISTNBQ3B726 338 aaPredicted RBP21.53■■□□□ 1.04
RNF40-206ENST00000564260 DZIP3Q86Y13 1208 aaKnown RBP21.53■■□□□ 1.04
RNF40-206ENST00000564260 C8orf58Q8NAV2 365 aa21.53■■□□□ 1.04
RNF40-206ENST00000564260 ZNF428Q96B54 188 aa21.53■■□□□ 1.04
RNF40-206ENST00000564260 HYPKQ9NX55 129 aa21.53■■□□□ 1.04
RNF40-206ENST00000564260 SLFN5Q08AF3 891 aa21.52■■□□□ 1.04
RNF40-206ENST00000564260 PDIA6Q15084 440 aa21.52■■□□□ 1.04
RNF40-206ENST00000564260 KRT24Q2M2I5 525 aa21.52■■□□□ 1.04
RNF40-206ENST00000564260 ATF5Q9Y2D1 282 aaPredicted RBP21.52■■□□□ 1.04
RNF40-206ENST00000564260 CT47B1P0C2W7 299 aaPredicted RBP21.51■■□□□ 1.03
RNF40-206ENST00000564260 USPL1Q5W0Q7 1092 aa21.51■■□□□ 1.03
RNF40-206ENST00000564260 KIF6Q6ZMV9 814 aa21.51■■□□□ 1.03
RNF40-206ENST00000564260 LRP10Q7Z4F1 713 aa21.51■■□□□ 1.03
RNF40-206ENST00000564260 TRMT2AQ8IZ69 625 aaKnown RBP21.51■■□□□ 1.03
RNF40-206ENST00000564260 SPINK5Q9NQ38 1064 aaPredicted RBP21.51■■□□□ 1.03
RNF40-206ENST00000564260 ZBED9Q6R2W3 1325 aa21.51■■□□□ 1.03
RNF40-206ENST00000564260 SCN7AQ01118 1682 aa21.5■■□□□ 1.03
RNF40-206ENST00000564260 SENP3-EIF4A1A0A087X0R7 540 aa21.5■■□□□ 1.03
RNF40-206ENST00000564260 CAMTA2O94983 1202 aa21.5■■□□□ 1.03
RNF40-206ENST00000564260 HNRNPUQ00839 825 aaKnown RBP eCLIP21.5■■□□□ 1.03
RNF40-206ENST00000564260 ARXQ96QS3 562 aa21.5■■□□□ 1.03
RNF40-206ENST00000564260 SMIM5Q71RC9 77 aa21.49■■□□□ 1.03
RNF40-206ENST00000564260 STK31Q9BXU1 1019 aa21.49■■□□□ 1.03
RNF40-206ENST00000564260 ZNF330Q9Y3S2 320 aaPredicted RBP21.49■■□□□ 1.03
RNF40-206ENST00000564260 CHPF2Q9P2E5 772 aa21.48■■□□□ 1.03
RNF40-206ENST00000564260 PPP1R1BQ9UD71 204 aaPredicted RBP21.48■■□□□ 1.03
RNF40-206ENST00000564260 SRP68Q9UHB9 627 aaKnown RBP21.48■■□□□ 1.03
RNF40-206ENST00000564260 TBC1D2BQ9UPU7 963 aa21.48■■□□□ 1.03
RNF40-206ENST00000564260 MAP3K15Q6ZN16 1313 aa21.48■■□□□ 1.03
RNF40-206ENST00000564260 VAMP4O75379 141 aa21.47■■□□□ 1.03
RNF40-206ENST00000564260 MMP10P09238 476 aa21.47■■□□□ 1.03
RNF40-206ENST00000564260 MYL6BP14649 208 aa21.47■■□□□ 1.03
RNF40-206ENST00000564260 TM4SF1P30408 202 aa21.47■■□□□ 1.03
RNF40-206ENST00000564260 EXOSC9Q06265 439 aaKnown RBP21.47■■□□□ 1.03
RNF40-206ENST00000564260 FKBP8Q14318 412 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 121.9 ms