RNA–Protein interactions for RNA: ENST00000564247.1

CMTM3-208, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 2

Gene CMTM3, Length 1,127 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-208ENST00000564247 AMIGO3Q86WK7 504 aa21.95■■□□□ 1.1
CMTM3-208ENST00000564247 TSPYL4Q9UJ04 414 aa21.95■■□□□ 1.1
CMTM3-208ENST00000564247 BTBD11A6QL63 1104 aa21.94■■□□□ 1.1
CMTM3-208ENST00000564247 PTCD1O75127 700 aaKnown RBP21.94■■□□□ 1.1
CMTM3-208ENST00000564247 DUSP27Q5VZP5 1158 aa21.94■■□□□ 1.1
CMTM3-208ENST00000564247 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.93■■□□□ 1.1
CMTM3-208ENST00000564247 GNPATO15228 680 aa21.93■■□□□ 1.1
CMTM3-208ENST00000564247 RC3H1Q5TC82 1133 aaKnown RBP21.93■■□□□ 1.1
CMTM3-208ENST00000564247 FHDC1Q9C0D6 1143 aaPredicted RBP21.93■■□□□ 1.1
CMTM3-208ENST00000564247 TJP1Q07157 1748 aa21.92■■□□□ 1.1
CMTM3-208ENST00000564247 CNTNAP4Q9C0A0 1308 aa21.92■■□□□ 1.1
CMTM3-208ENST00000564247 TSR2Q969E8 191 aaKnown RBP21.92■■□□□ 1.1
CMTM3-208ENST00000564247 MBIPQ9NS73 344 aa21.92■■□□□ 1.1
CMTM3-208ENST00000564247 MIS18AQ9NYP9 233 aa21.92■■□□□ 1.1
CMTM3-208ENST00000564247 MYH14Q7Z406 1995 aaKnown RBP21.92■■□□□ 1.1
CMTM3-208ENST00000564247 SIPA1L3O60292 1781 aaPredicted RBP21.92■■□□□ 1.1
CMTM3-208ENST00000564247 FANCIQ9NVI1 1328 aa21.91■■□□□ 1.1
CMTM3-208ENST00000564247 PHF14O94880 888 aa21.91■■□□□ 1.1
CMTM3-208ENST00000564247 SYT17Q9BSW7 474 aa21.91■■□□□ 1.1
CMTM3-208ENST00000564247 UBR2Q8IWV8 1755 aa21.9■■□□□ 1.1
CMTM3-208ENST00000564247 SMIM5Q71RC9 77 aa21.9■■□□□ 1.1
CMTM3-208ENST00000564247 SLC39A6Q13433 755 aa21.89■■□□□ 1.09
CMTM3-208ENST00000564247 RTCBQ9Y3I0 505 aaKnown RBP21.89■■□□□ 1.09
CMTM3-208ENST00000564247 KCPQ6ZWJ8 1503 aa21.89■■□□□ 1.09
CMTM3-208ENST00000564247 EXOSC9Q06265 439 aaKnown RBP21.87■■□□□ 1.09
CMTM3-208ENST00000564247 MSL1Q68DK7 614 aa21.87■■□□□ 1.09
CMTM3-208ENST00000564247 TTC5Q8N0Z6 440 aa21.87■■□□□ 1.09
CMTM3-208ENST00000564247 RPS6KA4O75676 772 aa21.86■■□□□ 1.09
CMTM3-208ENST00000564247 ADRA2BP18089 450 aa21.86■■□□□ 1.09
CMTM3-208ENST00000564247 TRAPPC3LQ5T215 181 aa21.86■■□□□ 1.09
CMTM3-208ENST00000564247 CRKLP46109 303 aaKnown RBP21.85■■□□□ 1.09
CMTM3-208ENST00000564247 ZNF790Q6PG37 636 aa21.85■■□□□ 1.09
CMTM3-208ENST00000564247 VSIG10Q8N0Z9 540 aa21.85■■□□□ 1.09
CMTM3-208ENST00000564247 DCAF8L1A6NGE4 600 aa21.84■■□□□ 1.09
CMTM3-208ENST00000564247 CT47B1P0C2W7 299 aaPredicted RBP21.84■■□□□ 1.09
CMTM3-208ENST00000564247 DNAJC10Q8IXB1 793 aa21.83■■□□□ 1.09
CMTM3-208ENST00000564247 ARHGEF1Q92888 912 aaKnown RBP21.83■■□□□ 1.09
CMTM3-208ENST00000564247 C4AP0C0L4 1744 aa21.83■■□□□ 1.08
CMTM3-208ENST00000564247 EIF4A1P60842 406 aaKnown RBP21.82■■□□□ 1.08
CMTM3-208ENST00000564247 INTS5Q6P9B9 1019 aaKnown RBP21.82■■□□□ 1.08
CMTM3-208ENST00000564247 ELL2O00472 640 aaPredicted RBP21.81■■□□□ 1.08
CMTM3-208ENST00000564247 KCNQ3O43525 872 aa21.81■■□□□ 1.08
CMTM3-208ENST00000564247 CYP19A1P11511 503 aaPredicted RBP21.81■■□□□ 1.08
CMTM3-208ENST00000564247 TWISTNBQ3B726 338 aaPredicted RBP21.81■■□□□ 1.08
CMTM3-208ENST00000564247 CHMP4AQ9BY43 222 aa21.81■■□□□ 1.08
CMTM3-208ENST00000564247 RFC4P35249 363 aa21.8■■□□□ 1.08
CMTM3-208ENST00000564247 KLHL34Q8N239 644 aa21.8■■□□□ 1.08
CMTM3-208ENST00000564247 C8orf58Q8NAV2 365 aa21.8■■□□□ 1.08
CMTM3-208ENST00000564247 FMNL2Q96PY5 1086 aa21.8■■□□□ 1.08
CMTM3-208ENST00000564247 CCDC87Q9NVE4 849 aa21.8■■□□□ 1.08
CMTM3-208ENST00000564247 SOS1Q07889 1333 aaPredicted RBP21.8■■□□□ 1.08
CMTM3-208ENST00000564247 KDM3BQ7LBC6 1761 aa21.79■■□□□ 1.08
CMTM3-208ENST00000564247 ZNF428Q96B54 188 aa21.79■■□□□ 1.08
CMTM3-208ENST00000564247 ZNF496Q96IT1 587 aaPredicted RBP21.79■■□□□ 1.08
CMTM3-208ENST00000564247 RCAN3Q9UKA8 241 aa21.79■■□□□ 1.08
CMTM3-208ENST00000564247 UTRNP46939 3433 aa21.79■■□□□ 1.08
CMTM3-208ENST00000564247 HEG1Q9ULI3 1381 aa21.78■■□□□ 1.08
CMTM3-208ENST00000564247 NLGN1Q8N2Q7 840 aa21.78■■□□□ 1.08
CMTM3-208ENST00000564247 GOLGB1Q14789 3259 aaKnown RBP21.78■■□□□ 1.08
CMTM3-208ENST00000564247 VAMP4O75379 141 aa21.77■■□□□ 1.08
CMTM3-208ENST00000564247 TSPYL6Q8N831 410 aa21.77■■□□□ 1.08
CMTM3-208ENST00000564247 CD2APQ9Y5K6 639 aa21.77■■□□□ 1.08
CMTM3-208ENST00000564247 STARD3NLO95772 234 aa21.76■■□□□ 1.07
CMTM3-208ENST00000564247 HOXB7P09629 217 aa21.76■■□□□ 1.07
CMTM3-208ENST00000564247 GYS1P13807 737 aa21.76■■□□□ 1.07
CMTM3-208ENST00000564247 KRT24Q2M2I5 525 aa21.76■■□□□ 1.07
CMTM3-208ENST00000564247 TEX13AQ9BXU3 409 aaPredicted RBP21.76■■□□□ 1.07
CMTM3-208ENST00000564247 SNRPA1P09661 255 aaKnown RBP21.75■■□□□ 1.07
CMTM3-208ENST00000564247 NLGN2Q8NFZ4 835 aa21.75■■□□□ 1.07
CMTM3-208ENST00000564247 GIGYF1O75420 1035 aaPredicted RBP21.74■■□□□ 1.07
CMTM3-208ENST00000564247 ZBTB1Q9Y2K1 713 aa21.74■■□□□ 1.07
CMTM3-208ENST00000564247 USP42Q9H9J4 1324 aaKnown RBP21.74■■□□□ 1.07
CMTM3-208ENST00000564247 MMP10P09238 476 aa21.73■■□□□ 1.07
CMTM3-208ENST00000564247 RARSP54136 660 aaKnown RBP21.72■■□□□ 1.07
CMTM3-208ENST00000564247 ALDH1L2Q3SY69 923 aa21.72■■□□□ 1.07
CMTM3-208ENST00000564247 CCDC30Q5VVM6 783 aa21.72■■□□□ 1.07
CMTM3-208ENST00000564247 EIF2S2P20042 333 aaKnown RBP21.71■■□□□ 1.07
CMTM3-208ENST00000564247 SRP68Q9UHB9 627 aaKnown RBP21.71■■□□□ 1.07
CMTM3-208ENST00000564247 COL15A1P39059 1388 aa21.71■■□□□ 1.07
CMTM3-208ENST00000564247 HDGFL1Q5TGJ6 251 aa21.7■■□□□ 1.06
CMTM3-208ENST00000564247 STK31Q9BXU1 1019 aa21.7■■□□□ 1.06
CMTM3-208ENST00000564247 KIF13BQ9NQT8 1826 aa21.7■■□□□ 1.06
CMTM3-208ENST00000564247 ZPR1O75312 459 aa21.69■■□□□ 1.06
CMTM3-208ENST00000564247 CANXP27824 592 aaKnown RBP21.69■■□□□ 1.06
CMTM3-208ENST00000564247 SMC4Q9NTJ3 1288 aa21.69■■□□□ 1.06
CMTM3-208ENST00000564247 NARFQ9UHQ1 456 aa21.69■■□□□ 1.06
CMTM3-208ENST00000564247 EIF5P55010 431 aaKnown RBP21.68■■□□□ 1.06
CMTM3-208ENST00000564247 FKBP8Q14318 412 aa21.68■■□□□ 1.06
CMTM3-208ENST00000564247 GPR162Q16538 588 aa21.68■■□□□ 1.06
CMTM3-208ENST00000564247 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.68■■□□□ 1.06
CMTM3-208ENST00000564247 SSH1Q8WYL5 1049 aa21.68■■□□□ 1.06
CMTM3-208ENST00000564247 SUPT16HQ9Y5B9 1047 aaKnown RBP21.68■■□□□ 1.06
CMTM3-208ENST00000564247 CHD4Q14839 1912 aa21.67■■□□□ 1.06
CMTM3-208ENST00000564247 NECTIN2Q92692 538 aa21.67■■□□□ 1.06
CMTM3-208ENST00000564247 PARP3Q9Y6F1 533 aa21.67■■□□□ 1.06
CMTM3-208ENST00000564247 A0A087WZG4 1122 aa21.66■■□□□ 1.06
CMTM3-208ENST00000564247 BCAR3O75815 825 aa21.66■■□□□ 1.06
CMTM3-208ENST00000564247 IL6STP40189 918 aaPredicted RBP21.66■■□□□ 1.06
CMTM3-208ENST00000564247 USPL1Q5W0Q7 1092 aa21.66■■□□□ 1.06
CMTM3-208ENST00000564247 USP16Q9Y5T5 823 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms