RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 GOLGA6L1Q8N7Z2 621 aa8.59□□□□□ -1.03
VPS35-205ENST00000563984 CENPCQ03188 943 aa8.58□□□□□ -1.04
VPS35-205ENST00000563984 WDR44Q5JSH3 913 aa8.58□□□□□ -1.04
VPS35-205ENST00000563984 NOD1Q9Y239 953 aa8.58□□□□□ -1.04
VPS35-205ENST00000563984 HRH3Q9Y5N1 445 aa8.58□□□□□ -1.04
VPS35-205ENST00000563984 SPATA31C2B4DYI2 1134 aa8.57□□□□□ -1.04
VPS35-205ENST00000563984 WASLO00401 505 aaPredicted RBP8.57□□□□□ -1.04
VPS35-205ENST00000563984 PIK3R2O00459 728 aa8.57□□□□□ -1.04
VPS35-205ENST00000563984 AMPD1P23109 780 aa8.57□□□□□ -1.04
VPS35-205ENST00000563984 RSPO4Q2I0M5 234 aaPredicted RBP8.57□□□□□ -1.04
VPS35-205ENST00000563984 ARTNQ5T4W7 220 aa8.57□□□□□ -1.04
VPS35-205ENST00000563984 TAS1R3Q7RTX0 852 aa8.57□□□□□ -1.04
VPS35-205ENST00000563984 GLMNQ92990 594 aa8.57□□□□□ -1.04
VPS35-205ENST00000563984 BTBD6Q96KE9 485 aa8.57□□□□□ -1.04
VPS35-205ENST00000563984 ETNK1Q9HBU6 452 aa8.57□□□□□ -1.04
VPS35-205ENST00000563984 GPAMQ9HCL2 828 aa8.57□□□□□ -1.04
VPS35-205ENST00000563984 ZFP64Q9NPA5 681 aa8.57□□□□□ -1.04
VPS35-205ENST00000563984 TIMMDC1Q9NPL8 285 aa8.57□□□□□ -1.04
VPS35-205ENST00000563984 USP17L5A8MUK1 530 aa8.56□□□□□ -1.04
VPS35-205ENST00000563984 C2CD2LO14523 706 aa8.56□□□□□ -1.04
VPS35-205ENST00000563984 ATP9BO43861 1147 aa8.56□□□□□ -1.04
VPS35-205ENST00000563984 DGKGP49619 791 aa8.56□□□□□ -1.04
VPS35-205ENST00000563984 NCOA4Q13772 614 aa8.56□□□□□ -1.04
VPS35-205ENST00000563984 UBAP2LQ14157 1087 aaKnown RBP8.56□□□□□ -1.04
VPS35-205ENST00000563984 PLEKHM2Q8IWE5 1019 aa8.56□□□□□ -1.04
VPS35-205ENST00000563984 UCN2Q96RP3 112 aa8.56□□□□□ -1.04
VPS35-205ENST00000563984 ZSCAN10Q96SZ4 725 aaPredicted RBP8.56□□□□□ -1.04
VPS35-205ENST00000563984 INHAP05111 366 aa8.55□□□□□ -1.04
VPS35-205ENST00000563984 GTF2E1P29083 439 aaPredicted RBP8.55□□□□□ -1.04
VPS35-205ENST00000563984 GDF10P55107 478 aa8.55□□□□□ -1.04
VPS35-205ENST00000563984 SLCO4C1Q6ZQN7 724 aa8.55□□□□□ -1.04
VPS35-205ENST00000563984 TBC1D9Q6ZT07 1266 aa8.55□□□□□ -1.04
VPS35-205ENST00000563984 NOP53Q9NZM5 478 aaKnown RBP8.55□□□□□ -1.04
VPS35-205ENST00000563984 PCDHGA11Q9Y5H2 935 aa8.55□□□□□ -1.04
VPS35-205ENST00000563984 GATA4P43694 442 aa8.54□□□□□ -1.04
VPS35-205ENST00000563984 SCNN1DP51172 638 aa8.54□□□□□ -1.04
VPS35-205ENST00000563984 NKAPLQ5M9Q1 402 aa8.54□□□□□ -1.04
VPS35-205ENST00000563984 CALR3Q96L12 384 aaKnown RBP8.54□□□□□ -1.04
VPS35-205ENST00000563984 FHDC1Q9C0D6 1143 aaPredicted RBP8.54□□□□□ -1.04
VPS35-205ENST00000563984 GOLGA2P5Q9HBQ8 144 aa8.54□□□□□ -1.04
VPS35-205ENST00000563984 GGA1Q9UJY5 639 aa8.54□□□□□ -1.04
VPS35-205ENST00000563984 PHF24Q9UPV7 400 aa8.54□□□□□ -1.04
VPS35-205ENST00000563984 GTF3C3Q9Y5Q9 886 aa8.54□□□□□ -1.04
VPS35-205ENST00000563984 USP17L3A6NCW0 530 aa8.53□□□□□ -1.04
VPS35-205ENST00000563984 USP17L4A6NCW7 530 aa8.53□□□□□ -1.04
VPS35-205ENST00000563984 GTF2IP78347 998 aa8.53□□□□□ -1.04
VPS35-205ENST00000563984 TMEM214Q6NUQ4 689 aaKnown RBP8.53□□□□□ -1.04
VPS35-205ENST00000563984 USP17L2Q6R6M4 530 aa8.53□□□□□ -1.04
VPS35-205ENST00000563984 USP17L1Q7RTZ2 530 aa8.53□□□□□ -1.04
VPS35-205ENST00000563984 TRIM50Q86XT4 487 aa8.53□□□□□ -1.04
VPS35-205ENST00000563984 EPXP11678 715 aa8.52□□□□□ -1.05
VPS35-205ENST00000563984 C4orf17Q53FE4 359 aa8.52□□□□□ -1.05
VPS35-205ENST00000563984 DEPDC4Q8N2C3 294 aa8.52□□□□□ -1.05
VPS35-205ENST00000563984 TMEM229AB2RXF0 380 aa8.51□□□□□ -1.05
VPS35-205ENST00000563984 ATP1A2P50993 1020 aa8.51□□□□□ -1.05
VPS35-205ENST00000563984 TLR1Q15399 786 aa8.51□□□□□ -1.05
VPS35-205ENST00000563984 GNASQ5JWF2 1037 aa8.51□□□□□ -1.05
VPS35-205ENST00000563984 PPARGC1BQ86YN6 1023 aaKnown RBP8.51□□□□□ -1.05
VPS35-205ENST00000563984 SLC4A9Q96Q91 983 aa8.51□□□□□ -1.05
VPS35-205ENST00000563984 BACH1O14867 736 aa8.5□□□□□ -1.05
VPS35-205ENST00000563984 BMP4P12644 408 aa8.5□□□□□ -1.05
VPS35-205ENST00000563984 SMTNP53814 917 aa8.5□□□□□ -1.05
VPS35-205ENST00000563984 RHBDD1Q8TEB9 315 aa8.5□□□□□ -1.05
VPS35-205ENST00000563984 RUBCNLQ9H714 662 aa8.5□□□□□ -1.05
VPS35-205ENST00000563984 TFIP11Q9UBB9 837 aaKnown RBP8.5□□□□□ -1.05
VPS35-205ENST00000563984 PSME1Q06323 249 aa8.49□□□□□ -1.05
VPS35-205ENST00000563984 ARXQ96QS3 562 aa8.49□□□□□ -1.05
VPS35-205ENST00000563984 ZMYND15Q9H091 742 aa8.49□□□□□ -1.05
VPS35-205ENST00000563984 MKRN1Q9UHC7 482 aaKnown RBP8.49□□□□□ -1.05
VPS35-205ENST00000563984 PALM3A6NDB9 673 aaPredicted RBP8.48□□□□□ -1.05
VPS35-205ENST00000563984 PLA2G4AP47712 749 aa8.48□□□□□ -1.05
VPS35-205ENST00000563984 CTBSQ01459 385 aa8.48□□□□□ -1.05
VPS35-205ENST00000563984 MTFR1Q15390 333 aa8.48□□□□□ -1.05
VPS35-205ENST00000563984 NBPF11Q86T75 865 aa8.48□□□□□ -1.05
VPS35-205ENST00000563984 PPP1R12CQ9BZL4 782 aa8.48□□□□□ -1.05
VPS35-205ENST00000563984 SERTAD1Q9UHV2 236 aa8.48□□□□□ -1.05
VPS35-205ENST00000563984 ZNF777Q9ULD5 760 aaPredicted RBP8.48□□□□□ -1.05
VPS35-205ENST00000563984 MAFBQ9Y5Q3 323 aaPredicted RBP8.48□□□□□ -1.05
VPS35-205ENST00000563984 A0A1B0GTH6 734 aa8.47□□□□□ -1.05
VPS35-205ENST00000563984 A6NJY4 79 aa8.47□□□□□ -1.05
VPS35-205ENST00000563984 DYRK3O43781 588 aa8.47□□□□□ -1.05
VPS35-205ENST00000563984 MSX1P28360 303 aa8.47□□□□□ -1.05
VPS35-205ENST00000563984 LARGE2Q8N3Y3 721 aa8.47□□□□□ -1.05
VPS35-205ENST00000563984 TPSG1Q9NRR2 321 aa8.47□□□□□ -1.05
VPS35-205ENST00000563984 ATXN7L1Q9ULK2 861 aaPredicted RBP8.47□□□□□ -1.05
VPS35-205ENST00000563984 CDK2AP1O14519 115 aa8.46□□□□□ -1.06
VPS35-205ENST00000563984 ZBTB7BO15156 539 aaPredicted RBP8.46□□□□□ -1.06
VPS35-205ENST00000563984 NIFKQ9BYG3 293 aaKnown RBP8.46□□□□□ -1.06
VPS35-205ENST00000563984 NDFIP2Q9NV92 336 aa8.46□□□□□ -1.06
VPS35-205ENST00000563984 DNAAF2Q9NVR5 837 aaKnown RBP8.46□□□□□ -1.06
VPS35-205ENST00000563984 CLDN10P78369 228 aa8.45□□□□□ -1.06
VPS35-205ENST00000563984 LBRQ14739 615 aaKnown RBP8.45□□□□□ -1.06
VPS35-205ENST00000563984 CCDC102BQ68D86 513 aa8.45□□□□□ -1.06
VPS35-205ENST00000563984 OGFOD1Q8N543 542 aa8.45□□□□□ -1.06
VPS35-205ENST00000563984 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.45□□□□□ -1.06
VPS35-205ENST00000563984 TRIM11Q96F44 468 aa8.45□□□□□ -1.06
VPS35-205ENST00000563984 ABHD17AQ96GS6 310 aa8.45□□□□□ -1.06
VPS35-205ENST00000563984 ZNF358Q9NW07 568 aa8.45□□□□□ -1.06
VPS35-205ENST00000563984 NEURL1BA8MQ27 555 aa8.44□□□□□ -1.06
VPS35-205ENST00000563984 CSB-PGBD3P0DP91 1061 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms