RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 PIP4K2AP48426 406 aaPredicted RBP12.79□□□□□ -0.36
CLK3-208ENST00000562626 INTS5Q6P9B9 1019 aaKnown RBP12.79□□□□□ -0.36
CLK3-208ENST00000562626 CDCA7LQ96GN5 454 aa12.79□□□□□ -0.36
CLK3-208ENST00000562626 IFT57Q9NWB7 429 aa12.79□□□□□ -0.36
CLK3-208ENST00000562626 PNPLA7Q6ZV29 1317 aa12.79□□□□□ -0.36
CLK3-208ENST00000562626 ARFGEF2Q9Y6D5 1785 aa12.79□□□□□ -0.36
CLK3-208ENST00000562626 GIGYF1O75420 1035 aaPredicted RBP12.78□□□□□ -0.36
CLK3-208ENST00000562626 CRKLP46109 303 aaKnown RBP12.78□□□□□ -0.36
CLK3-208ENST00000562626 VSIG10Q8N0Z9 540 aa12.78□□□□□ -0.36
CLK3-208ENST00000562626 ZBTB1Q9Y2K1 713 aa12.78□□□□□ -0.36
CLK3-208ENST00000562626 CNTNAP4Q9C0A0 1308 aa12.78□□□□□ -0.36
CLK3-208ENST00000562626 FANCIQ9NVI1 1328 aa12.78□□□□□ -0.36
CLK3-208ENST00000562626 GNAI1P63096 354 aa12.77□□□□□ -0.37
CLK3-208ENST00000562626 HNRNPUQ00839 825 aaKnown RBP eCLIP12.77□□□□□ -0.37
CLK3-208ENST00000562626 WDR63Q8IWG1 891 aa12.77□□□□□ -0.37
CLK3-208ENST00000562626 TSPYL6Q8N831 410 aa12.77□□□□□ -0.37
CLK3-208ENST00000562626 C8orf58Q8NAV2 365 aa12.77□□□□□ -0.37
CLK3-208ENST00000562626 BABAM1Q9NWV8 329 aa12.77□□□□□ -0.37
CLK3-208ENST00000562626 STK32BQ9NY57 414 aa12.77□□□□□ -0.37
CLK3-208ENST00000562626 IL16Q14005 1332 aa12.77□□□□□ -0.37
CLK3-208ENST00000562626 NBPF26B4DH59 902 aa12.76□□□□□ -0.37
CLK3-208ENST00000562626 GNPATO15228 680 aa12.76□□□□□ -0.37
CLK3-208ENST00000562626 A1BGP04217 495 aa12.76□□□□□ -0.37
CLK3-208ENST00000562626 NBPF14Q5TI25 921 aa12.76□□□□□ -0.37
CLK3-208ENST00000562626 NBPF10Q6P3W6 841 aaKnown RBP12.76□□□□□ -0.37
CLK3-208ENST00000562626 COL23A1Q86Y22 540 aaPredicted RBP12.76□□□□□ -0.37
CLK3-208ENST00000562626 NBPF15Q8N660 670 aa12.76□□□□□ -0.37
CLK3-208ENST00000562626 ELL2O00472 640 aaPredicted RBP12.75□□□□□ -0.37
CLK3-208ENST00000562626 SNRPA1P09661 255 aaKnown RBP12.75□□□□□ -0.37
CLK3-208ENST00000562626 SOS1Q07889 1333 aaPredicted RBP12.75□□□□□ -0.37
CLK3-208ENST00000562626 AK7Q96M32 723 aa12.75□□□□□ -0.37
CLK3-208ENST00000562626 CCDC87Q9NVE4 849 aa12.75□□□□□ -0.37
CLK3-208ENST00000562626 PHF14O94880 888 aa12.74□□□□□ -0.37
CLK3-208ENST00000562626 ANXA1P04083 346 aa12.74□□□□□ -0.37
CLK3-208ENST00000562626 CANXP27824 592 aaKnown RBP12.74□□□□□ -0.37
CLK3-208ENST00000562626 CALD1Q05682 793 aaKnown RBP12.74□□□□□ -0.37
CLK3-208ENST00000562626 PROSER3Q2NL68 480 aa12.74□□□□□ -0.37
CLK3-208ENST00000562626 RC3H1Q5TC82 1133 aaKnown RBP12.74□□□□□ -0.37
CLK3-208ENST00000562626 DUSP27Q5VZP5 1158 aa12.74□□□□□ -0.37
CLK3-208ENST00000562626 NGEFQ8N5V2 710 aa12.74□□□□□ -0.37
CLK3-208ENST00000562626 NECTIN2Q92692 538 aa12.74□□□□□ -0.37
CLK3-208ENST00000562626 TFCP2L1Q9NZI6 479 aa12.74□□□□□ -0.37
CLK3-208ENST00000562626 COL15A1P39059 1388 aa12.73□□□□□ -0.37
CLK3-208ENST00000562626 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.73□□□□□ -0.37
CLK3-208ENST00000562626 RPS6KA4O75676 772 aa12.73□□□□□ -0.37
CLK3-208ENST00000562626 EXOSC9Q06265 439 aaKnown RBP12.73□□□□□ -0.37
CLK3-208ENST00000562626 SLFN5Q08AF3 891 aa12.73□□□□□ -0.37
CLK3-208ENST00000562626 PDIA6Q15084 440 aa12.73□□□□□ -0.37
CLK3-208ENST00000562626 ANKRD31Q8N7Z5 1873 aa12.72□□□□□ -0.37
CLK3-208ENST00000562626 KIAA1551Q9HCM1 1747 aa12.72□□□□□ -0.37
CLK3-208ENST00000562626 NRXN2Q9P2S2 1712 aa12.72□□□□□ -0.37
CLK3-208ENST00000562626 EIF2S2P20042 333 aaKnown RBP12.72□□□□□ -0.37
CLK3-208ENST00000562626 GOLGA2Q08379 1002 aa12.72□□□□□ -0.37
CLK3-208ENST00000562626 LRP10Q7Z4F1 713 aa12.72□□□□□ -0.37
CLK3-208ENST00000562626 TRMT2AQ8IZ69 625 aaKnown RBP12.72□□□□□ -0.37
CLK3-208ENST00000562626 SRP68Q9UHB9 627 aaKnown RBP12.72□□□□□ -0.37
CLK3-208ENST00000562626 KIF13BQ9NQT8 1826 aa12.72□□□□□ -0.37
CLK3-208ENST00000562626 DCAF8L1A6NGE4 600 aa12.71□□□□□ -0.37
CLK3-208ENST00000562626 TCERG1O14776 1098 aaKnown RBP12.71□□□□□ -0.37
CLK3-208ENST00000562626 STARD3NLO95772 234 aa12.71□□□□□ -0.37
CLK3-208ENST00000562626 SSFA2P28290 1259 aa12.71□□□□□ -0.37
CLK3-208ENST00000562626 EIF5P55010 431 aaKnown RBP12.71□□□□□ -0.37
CLK3-208ENST00000562626 C1QTNF8P60827 252 aa12.71□□□□□ -0.37
CLK3-208ENST00000562626 ARHGEF1Q92888 912 aaKnown RBP12.71□□□□□ -0.37
CLK3-208ENST00000562626 TEX13AQ9BXU3 409 aaPredicted RBP12.71□□□□□ -0.37
CLK3-208ENST00000562626 RTCBQ9Y3I0 505 aaKnown RBP12.71□□□□□ -0.37
CLK3-208ENST00000562626 N4BP2Q86UW6 1770 aaPredicted RBP12.71□□□□□ -0.38
CLK3-208ENST00000562626 CACNA1SQ13698 1873 aa12.7□□□□□ -0.38
CLK3-208ENST00000562626 ZBED9Q6R2W3 1325 aa12.7□□□□□ -0.38
CLK3-208ENST00000562626 ZBTB7AO95365 584 aa12.7□□□□□ -0.38
CLK3-208ENST00000562626 LAMB2P55268 1798 aa12.7□□□□□ -0.38
CLK3-208ENST00000562626 MYL6BP14649 208 aa12.69□□□□□ -0.38
CLK3-208ENST00000562626 IL6STP40189 918 aaPredicted RBP12.69□□□□□ -0.38
CLK3-208ENST00000562626 TWISTNBQ3B726 338 aaPredicted RBP12.69□□□□□ -0.38
CLK3-208ENST00000562626 MSL1Q68DK7 614 aa12.69□□□□□ -0.38
CLK3-208ENST00000562626 BCL2L12Q9HB09 334 aa12.69□□□□□ -0.38
CLK3-208ENST00000562626 CHPF2Q9P2E5 772 aa12.69□□□□□ -0.38
CLK3-208ENST00000562626 ZNF330Q9Y3S2 320 aaPredicted RBP12.69□□□□□ -0.38
CLK3-208ENST00000562626 USP42Q9H9J4 1324 aaKnown RBP12.68□□□□□ -0.38
CLK3-208ENST00000562626 E9PSI1 815 aa12.68□□□□□ -0.38
CLK3-208ENST00000562626 MSH5O43196 834 aa12.68□□□□□ -0.38
CLK3-208ENST00000562626 VAMP4O75379 141 aa12.68□□□□□ -0.38
CLK3-208ENST00000562626 HOXB7P09629 217 aa12.68□□□□□ -0.38
CLK3-208ENST00000562626 TRAPPC3LQ5T215 181 aa12.68□□□□□ -0.38
CLK3-208ENST00000562626 HDGFL1Q5TGJ6 251 aa12.68□□□□□ -0.38
CLK3-208ENST00000562626 TTLL7Q6ZT98 887 aa12.68□□□□□ -0.38
CLK3-208ENST00000562626 YTHDC1Q96MU7 727 aaKnown RBP12.68□□□□□ -0.38
CLK3-208ENST00000562626 MYH16Q9H6N6 1097 aa12.68□□□□□ -0.38
CLK3-208ENST00000562626 TBC1D2BQ9UPU7 963 aa12.68□□□□□ -0.38
CLK3-208ENST00000562626 ATF5Q9Y2D1 282 aaPredicted RBP12.68□□□□□ -0.38
CLK3-208ENST00000562626 BRCA1P38398 1863 aaKnown RBP12.68□□□□□ -0.38
CLK3-208ENST00000562626 SGIP1Q9BQI5 828 aa12.67□□□□□ -0.38
CLK3-208ENST00000562626 DDX60Q8IY21 1712 aaKnown RBP12.67□□□□□ -0.38
CLK3-208ENST00000562626 COL11A2P13942 1736 aaPredicted RBP12.66□□□□□ -0.38
CLK3-208ENST00000562626 CAMTA2O94983 1202 aa12.66□□□□□ -0.38
CLK3-208ENST00000562626 GYS1P13807 737 aa12.66□□□□□ -0.38
CLK3-208ENST00000562626 ADRA2BP18089 450 aa12.66□□□□□ -0.38
CLK3-208ENST00000562626 PTGER2P43116 358 aa12.66□□□□□ -0.38
CLK3-208ENST00000562626 FKBP8Q14318 412 aa12.66□□□□□ -0.38
CLK3-208ENST00000562626 USPL1Q5W0Q7 1092 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms