RNA–Protein interactions for RNA: ENST00000560620.1

CTDSPL2-209, Transcript of CTD small phosphatase like 2, humanhuman

TSL 3

Gene CTDSPL2, Length 863 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL2-209ENST00000560620 ZNF330Q9Y3S2 320 aaPredicted RBP17.1■□□□□ 0.33
CTDSPL2-209ENST00000560620 ANP32CO43423 234 aa17.09■□□□□ 0.33
CTDSPL2-209ENST00000560620 ZPR1O75312 459 aa17.09■□□□□ 0.33
CTDSPL2-209ENST00000560620 MMP10P09238 476 aa17.09■□□□□ 0.33
CTDSPL2-209ENST00000560620 THUMPD2Q9BTF0 503 aaKnown RBP17.09■□□□□ 0.33
CTDSPL2-209ENST00000560620 ZBTB1Q9Y2K1 713 aa17.09■□□□□ 0.33
CTDSPL2-209ENST00000560620 MIS18AQ9NYP9 233 aa17.08■□□□□ 0.32
CTDSPL2-209ENST00000560620 SRP68Q9UHB9 627 aaKnown RBP17.08■□□□□ 0.32
CTDSPL2-209ENST00000560620 ADAMTS8Q9UP79 889 aa17.08■□□□□ 0.32
CTDSPL2-209ENST00000560620 RRP7AQ9Y3A4 280 aaKnown RBP17.08■□□□□ 0.32
CTDSPL2-209ENST00000560620 GYS1P13807 737 aa17.07■□□□□ 0.32
CTDSPL2-209ENST00000560620 GPR162Q16538 588 aa17.07■□□□□ 0.32
CTDSPL2-209ENST00000560620 NLGN2Q8NFZ4 835 aa17.07■□□□□ 0.32
CTDSPL2-209ENST00000560620 PNISRQ8TF01 805 aaKnown RBP17.07■□□□□ 0.32
CTDSPL2-209ENST00000560620 RUNDC1Q96C34 613 aa17.07■□□□□ 0.32
CTDSPL2-209ENST00000560620 C4AP0C0L4 1744 aa17.07■□□□□ 0.32
CTDSPL2-209ENST00000560620 COL15A1P39059 1388 aa17.06■□□□□ 0.32
CTDSPL2-209ENST00000560620 SOS1Q07889 1333 aaPredicted RBP17.06■□□□□ 0.32
CTDSPL2-209ENST00000560620 USP42Q9H9J4 1324 aaKnown RBP17.06■□□□□ 0.32
CTDSPL2-209ENST00000560620 TMPOP42166 694 aaKnown RBP17.06■□□□□ 0.32
CTDSPL2-209ENST00000560620 LMOD3Q0VAK6 560 aa17.06■□□□□ 0.32
CTDSPL2-209ENST00000560620 SNRPA1P09661 255 aaKnown RBP17.05■□□□□ 0.32
CTDSPL2-209ENST00000560620 USPL1Q5W0Q7 1092 aa17.05■□□□□ 0.32
CTDSPL2-209ENST00000560620 PARP3Q9Y6F1 533 aa17.05■□□□□ 0.32
CTDSPL2-209ENST00000560620 CD2APQ9Y5K6 639 aa17.04■□□□□ 0.32
CTDSPL2-209ENST00000560620 A1BGP04217 495 aa17.03■□□□□ 0.32
CTDSPL2-209ENST00000560620 FKBP8Q14318 412 aa17.03■□□□□ 0.32
CTDSPL2-209ENST00000560620 USP16Q9Y5T5 823 aa17.03■□□□□ 0.32
CTDSPL2-209ENST00000560620 A0A087WZG4 1122 aa17.02■□□□□ 0.32
CTDSPL2-209ENST00000560620 PRAMEF22A3QJZ6 481 aa17.02■□□□□ 0.32
CTDSPL2-209ENST00000560620 NARFQ9UHQ1 456 aa17.02■□□□□ 0.32
CTDSPL2-209ENST00000560620 TSPYL4Q9UJ04 414 aa17.02■□□□□ 0.32
CTDSPL2-209ENST00000560620 PIP4K2AP48426 406 aaPredicted RBP17.01■□□□□ 0.31
CTDSPL2-209ENST00000560620 WWC3Q9ULE0 1092 aa17.01■□□□□ 0.31
CTDSPL2-209ENST00000560620 LAS1LQ9Y4W2 734 aaKnown RBP17.01■□□□□ 0.31
CTDSPL2-209ENST00000560620 IL6STP40189 918 aaPredicted RBP17■□□□□ 0.31
CTDSPL2-209ENST00000560620 EIF5P55010 431 aaKnown RBP17■□□□□ 0.31
CTDSPL2-209ENST00000560620 MRS2Q9HD23 443 aa17■□□□□ 0.31
CTDSPL2-209ENST00000560620 TBC1D2BQ9UPU7 963 aa17■□□□□ 0.31
CTDSPL2-209ENST00000560620 CCDC184Q52MB2 194 aa16.99■□□□□ 0.31
CTDSPL2-209ENST00000560620 BICDL1Q6ZP65 573 aa16.99■□□□□ 0.31
CTDSPL2-209ENST00000560620 KDM3BQ7LBC6 1761 aa16.98■□□□□ 0.31
CTDSPL2-209ENST00000560620 YY1P25490 414 aa16.98■□□□□ 0.31
CTDSPL2-209ENST00000560620 EIF4A1P60842 406 aaKnown RBP16.98■□□□□ 0.31
CTDSPL2-209ENST00000560620 APAF1O14727 1248 aa16.97■□□□□ 0.31
CTDSPL2-209ENST00000560620 DZIP3Q86Y13 1208 aaKnown RBP16.97■□□□□ 0.31
CTDSPL2-209ENST00000560620 GIGYF1O75420 1035 aaPredicted RBP16.96■□□□□ 0.31
CTDSPL2-209ENST00000560620 DDR1Q08345 913 aa16.96■□□□□ 0.31
CTDSPL2-209ENST00000560620 NFIXQ14938 502 aa16.96■□□□□ 0.31
CTDSPL2-209ENST00000560620 NGEFQ8N5V2 710 aa16.96■□□□□ 0.31
CTDSPL2-209ENST00000560620 TRIM35Q9UPQ4 493 aa16.96■□□□□ 0.31
CTDSPL2-209ENST00000560620 POLRMTO00411 1230 aaKnown RBP16.95■□□□□ 0.3
CTDSPL2-209ENST00000560620 NPHP1O15259 732 aa16.95■□□□□ 0.3
CTDSPL2-209ENST00000560620 TM4SF1P30408 202 aa16.95■□□□□ 0.3
CTDSPL2-209ENST00000560620 SENP3-EIF4A1A0A087X0R7 540 aa16.94■□□□□ 0.3
CTDSPL2-209ENST00000560620 A0A0G2JLW4 131 aa16.94■□□□□ 0.3
CTDSPL2-209ENST00000560620 GRIN3BO60391 1043 aa16.94■□□□□ 0.3
CTDSPL2-209ENST00000560620 YBX3P16989 372 aaKnown RBP eCLIP16.94■□□□□ 0.3
CTDSPL2-209ENST00000560620 TGFB2P61812 414 aa16.94■□□□□ 0.3
CTDSPL2-209ENST00000560620 BCL2L12Q9HB09 334 aa16.94■□□□□ 0.3
CTDSPL2-209ENST00000560620 BABAM1Q9NWV8 329 aa16.94■□□□□ 0.3
CTDSPL2-209ENST00000560620 GOLGB1Q14789 3259 aaKnown RBP16.94■□□□□ 0.3
CTDSPL2-209ENST00000560620 LAMB4A4D0S4 1761 aa16.94■□□□□ 0.3
CTDSPL2-209ENST00000560620 SERPINB2P05120 415 aa16.93■□□□□ 0.3
CTDSPL2-209ENST00000560620 MYL6BP14649 208 aa16.93■□□□□ 0.3
CTDSPL2-209ENST00000560620 EIF2S2P20042 333 aaKnown RBP16.93■□□□□ 0.3
CTDSPL2-209ENST00000560620 TBC1D9BQ66K14 1250 aa16.93■□□□□ 0.3
CTDSPL2-209ENST00000560620 C10orf71Q711Q0 1435 aa16.93■□□□□ 0.3
CTDSPL2-209ENST00000560620 N4BP2Q86UW6 1770 aaPredicted RBP16.92■□□□□ 0.3
CTDSPL2-209ENST00000560620 NBPF26B4DH59 902 aa16.92■□□□□ 0.3
CTDSPL2-209ENST00000560620 NBPF10Q6P3W6 841 aaKnown RBP16.92■□□□□ 0.3
CTDSPL2-209ENST00000560620 NBPF15Q8N660 670 aa16.92■□□□□ 0.3
CTDSPL2-209ENST00000560620 ZNF652Q9Y2D9 606 aa16.92■□□□□ 0.3
CTDSPL2-209ENST00000560620 UTRNP46939 3433 aa16.92■□□□□ 0.3
CTDSPL2-209ENST00000560620 SCN7AQ01118 1682 aa16.91■□□□□ 0.3
CTDSPL2-209ENST00000560620 CAMTA2O94983 1202 aa16.91■□□□□ 0.3
CTDSPL2-209ENST00000560620 CALD1Q05682 793 aaKnown RBP16.91■□□□□ 0.3
CTDSPL2-209ENST00000560620 SETDB2Q96T68 719 aa16.91■□□□□ 0.3
CTDSPL2-209ENST00000560620 PXDNLA1KZ92 1463 aa16.91■□□□□ 0.3
CTDSPL2-209ENST00000560620 KIF13BQ9NQT8 1826 aa16.91■□□□□ 0.3
CTDSPL2-209ENST00000560620 CHL1O00533 1208 aa16.9■□□□□ 0.3
CTDSPL2-209ENST00000560620 DPEP1P16444 411 aa16.9■□□□□ 0.3
CTDSPL2-209ENST00000560620 NECTIN2Q92692 538 aa16.9■□□□□ 0.3
CTDSPL2-209ENST00000560620 BCS1LQ9Y276 419 aa16.9■□□□□ 0.3
CTDSPL2-209ENST00000560620 CARMIL3Q8ND23 1372 aa16.89■□□□□ 0.3
CTDSPL2-209ENST00000560620 KIF6Q6ZMV9 814 aa16.89■□□□□ 0.29
CTDSPL2-209ENST00000560620 FAM9BQ8IZU0 186 aa16.89■□□□□ 0.29
CTDSPL2-209ENST00000560620 CFAP44Q96MT7 982 aa16.89■□□□□ 0.29
CTDSPL2-209ENST00000560620 CHD4Q14839 1912 aa16.89■□□□□ 0.29
CTDSPL2-209ENST00000560620 AFDNP55196 1824 aaKnown RBP16.89■□□□□ 0.29
CTDSPL2-209ENST00000560620 BCORQ6W2J9 1755 aa16.87■□□□□ 0.29
CTDSPL2-209ENST00000560620 CHRNA5P30532 468 aa16.87■□□□□ 0.29
CTDSPL2-209ENST00000560620 GNAI1P63096 354 aa16.87■□□□□ 0.29
CTDSPL2-209ENST00000560620 KRT24Q2M2I5 525 aa16.87■□□□□ 0.29
CTDSPL2-209ENST00000560620 CLEC4GQ6UXB4 293 aa16.87■□□□□ 0.29
CTDSPL2-209ENST00000560620 CCDC24Q8N4L8 307 aa16.87■□□□□ 0.29
CTDSPL2-209ENST00000560620 PIM2Q9P1W9 311 aa16.87■□□□□ 0.29
CTDSPL2-209ENST00000560620 FAM177BA6PVY3 158 aa16.86■□□□□ 0.29
CTDSPL2-209ENST00000560620 NBPF5PQ86XG9 351 aaPredicted RBP16.86■□□□□ 0.29
CTDSPL2-209ENST00000560620 CNBD1Q8NA66 436 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 146.5 ms