RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 EFHC2Q5JST6 749 aa3.27□□□□□ -1.89
USP3-209ENST00000558925 ERICH6Q7L0X2 663 aa3.27□□□□□ -1.89
USP3-209ENST00000558925 PGBD3Q8N328 593 aa3.27□□□□□ -1.89
USP3-209ENST00000558925 ZSCAN10Q96SZ4 725 aaPredicted RBP3.27□□□□□ -1.89
USP3-209ENST00000558925 GNL3Q9BVP2 549 aaKnown RBP eCLIP3.27□□□□□ -1.89
USP3-209ENST00000558925 STRN4Q9NRL3 753 aa3.27□□□□□ -1.89
USP3-209ENST00000558925 PCDHB9Q9Y5E1 797 aa3.27□□□□□ -1.89
USP3-209ENST00000558925 MAPTP10636 758 aaKnown RBP3.26□□□□□ -1.89
USP3-209ENST00000558925 TNP2Q05952 138 aa3.26□□□□□ -1.89
USP3-209ENST00000558925 TRIM52Q96A61 297 aa3.26□□□□□ -1.89
USP3-209ENST00000558925 XAGE2Q96GT9 111 aa3.26□□□□□ -1.89
USP3-209ENST00000558925 FMNL2Q96PY5 1086 aa3.26□□□□□ -1.89
USP3-209ENST00000558925 STARD13Q9Y3M8 1113 aa3.26□□□□□ -1.89
USP3-209ENST00000558925 PCDHB11Q9Y5F2 797 aa3.26□□□□□ -1.89
USP3-209ENST00000558925 PCDHGC4Q9Y5F7 938 aa3.26□□□□□ -1.89
USP3-209ENST00000558925 COL17A1Q9UMD9 1497 aaPredicted RBP3.26□□□□□ -1.89
USP3-209ENST00000558925 ARID1BQ8NFD5 2236 aaPredicted RBP3.25□□□□□ -1.89
USP3-209ENST00000558925 APBA3O96018 575 aa3.25□□□□□ -1.89
USP3-209ENST00000558925 GNRH1P01148 92 aa3.25□□□□□ -1.89
USP3-209ENST00000558925 USP17L8P0C7I0 530 aa3.25□□□□□ -1.89
USP3-209ENST00000558925 SELPP16109 830 aa3.25□□□□□ -1.89
USP3-209ENST00000558925 ADGRE1Q14246 886 aa3.25□□□□□ -1.89
USP3-209ENST00000558925 MBTPS1Q14703 1052 aa3.25□□□□□ -1.89
USP3-209ENST00000558925 FAM182BQ5T319 152 aa3.25□□□□□ -1.89
USP3-209ENST00000558925 ZNF468Q5VIY5 522 aaPredicted RBP3.25□□□□□ -1.89
USP3-209ENST00000558925 DDRGK1Q96HY6 314 aa3.25□□□□□ -1.89
USP3-209ENST00000558925 CDCA7Q9BWT1 371 aaPredicted RBP3.25□□□□□ -1.89
USP3-209ENST00000558925 AVENQ9NQS1 362 aaPredicted RBP3.25□□□□□ -1.89
USP3-209ENST00000558925 ZBBXA8MT70 800 aa3.24□□□□□ -1.89
USP3-209ENST00000558925 ATXN7O15265 892 aaPredicted RBP3.24□□□□□ -1.89
USP3-209ENST00000558925 ALBP02768 609 aa3.24□□□□□ -1.89
USP3-209ENST00000558925 NID1P14543 1247 aa3.24□□□□□ -1.89
USP3-209ENST00000558925 PLA2G4AP47712 749 aa3.24□□□□□ -1.89
USP3-209ENST00000558925 PRRT3Q5FWE3 981 aa3.24□□□□□ -1.89
USP3-209ENST00000558925 GNASQ5JWF2 1037 aa3.24□□□□□ -1.89
USP3-209ENST00000558925 TMEM214Q6NUQ4 689 aaKnown RBP3.24□□□□□ -1.89
USP3-209ENST00000558925 SSBP4Q9BWG4 385 aaPredicted RBP3.24□□□□□ -1.89
USP3-209ENST00000558925 ELOA3CA0A087WX78 387 aaPredicted RBP3.23□□□□□ -1.89
USP3-209ENST00000558925 ELOA3DA6NLF2 546 aaPredicted RBP3.23□□□□□ -1.89
USP3-209ENST00000558925 M0R082 166 aa3.23□□□□□ -1.89
USP3-209ENST00000558925 KHNYNO15037 678 aaKnown RBP3.23□□□□□ -1.89
USP3-209ENST00000558925 NRG1Q02297 640 aaPredicted RBP3.23□□□□□ -1.89
USP3-209ENST00000558925 ELOA3BQ3SY89 546 aa3.23□□□□□ -1.89
USP3-209ENST00000558925 LCE4AQ5TA78 99 aa3.23□□□□□ -1.89
USP3-209ENST00000558925 FIGNL1Q6PIW4 674 aa3.23□□□□□ -1.89
USP3-209ENST00000558925 SHISA2Q6UWI4 295 aa3.23□□□□□ -1.89
USP3-209ENST00000558925 PPARGC1BQ86YN6 1023 aaKnown RBP3.23□□□□□ -1.89
USP3-209ENST00000558925 ZNF295-AS1Q8N0V1 137 aa3.23□□□□□ -1.89
USP3-209ENST00000558925 ELOA3Q8NG57 546 aa3.23□□□□□ -1.89
USP3-209ENST00000558925 ZNF417Q8TAU3 575 aa3.23□□□□□ -1.89
USP3-209ENST00000558925 RHBDD1Q8TEB9 315 aa3.23□□□□□ -1.89
USP3-209ENST00000558925 CCDC85AQ96PX6 553 aaPredicted RBP3.23□□□□□ -1.89
USP3-209ENST00000558925 ARXQ96QS3 562 aa3.23□□□□□ -1.89
USP3-209ENST00000558925 ZNF587Q96SQ5 575 aaPredicted RBP3.23□□□□□ -1.89
USP3-209ENST00000558925 KRTAP17-1Q9BYP8 105 aa3.23□□□□□ -1.89
USP3-209ENST00000558925 A0A1W2PNR3 127 aa3.22□□□□□ -1.89
USP3-209ENST00000558925 GPR37L1O60883 481 aa3.22□□□□□ -1.89
USP3-209ENST00000558925 ELNP15502 786 aa3.22□□□□□ -1.89
USP3-209ENST00000558925 YBX3P16989 372 aaKnown RBP eCLIP3.22□□□□□ -1.89
USP3-209ENST00000558925 FZD5Q13467 585 aa3.22□□□□□ -1.89
USP3-209ENST00000558925 TSGA10IPQ3SY00 556 aa3.22□□□□□ -1.89
USP3-209ENST00000558925 NLRP8Q86W28 1048 aa3.22□□□□□ -1.89
USP3-209ENST00000558925 MICALL1Q8N3F8 863 aa3.22□□□□□ -1.89
USP3-209ENST00000558925 TP53INP1Q96A56 240 aa3.22□□□□□ -1.89
USP3-209ENST00000558925 GJD4Q96KN9 370 aaPredicted RBP3.22□□□□□ -1.89
USP3-209ENST00000558925 ZMYND15Q9H091 742 aa3.22□□□□□ -1.89
USP3-209ENST00000558925 RSPH6AQ9H0K4 717 aa3.22□□□□□ -1.89
USP3-209ENST00000558925 C1orf115Q9H7X2 142 aa3.22□□□□□ -1.89
USP3-209ENST00000558925 ETNK1Q9HBU6 452 aa3.22□□□□□ -1.89
USP3-209ENST00000558925 ARID3CA6NKF2 412 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 SPDYE3A6NKU9 549 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 EFSO43281 561 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 PAX4O43316 350 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 TXKP42681 527 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 TRIM28Q13263 835 aaKnown RBP3.21□□□□□ -1.9
USP3-209ENST00000558925 SKIV2LQ15477 1246 aaKnown RBP3.21□□□□□ -1.9
USP3-209ENST00000558925 SH3D19Q5HYK7 790 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 RNF20Q5VTR2 975 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 C20orf204Q6ZNR8 217 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 TBC1D9Q6ZT07 1266 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 SYT9Q86SS6 491 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 TXNRD3Q86VQ6 643 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 CCDC125Q86Z20 511 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 HOMEZQ8IX15 550 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 NACC1Q96RE7 527 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 KRTAP4-11Q9BYQ6 195 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 PRDM6Q9NQX0 595 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 RNF112Q9ULX5 631 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 USP3Q9Y6I4 520 aa3.21□□□□□ -1.9
USP3-209ENST00000558925 ADARB2-AS1A8MUL3 147 aa3.2□□□□□ -1.9
USP3-209ENST00000558925 FAM157BP0CG42 384 aa3.2□□□□□ -1.9
USP3-209ENST00000558925 TLR1Q15399 786 aa3.2□□□□□ -1.9
USP3-209ENST00000558925 CLUAP1Q96AJ1 413 aa3.2□□□□□ -1.9
USP3-209ENST00000558925 PCMTD1Q96MG8 357 aaPredicted RBP3.2□□□□□ -1.9
USP3-209ENST00000558925 ZIC5Q96T25 663 aa3.2□□□□□ -1.9
USP3-209ENST00000558925 SLC30A3Q99726 388 aa3.2□□□□□ -1.9
USP3-209ENST00000558925 ARID3AQ99856 593 aa3.2□□□□□ -1.9
USP3-209ENST00000558925 PRR12Q9ULL5 1215 aa3.2□□□□□ -1.9
USP3-209ENST00000558925 A0A0A0MRY4 1105 aa3.19□□□□□ -1.9
USP3-209ENST00000558925 C9orf172C9J069 976 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms