RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 BABAM1Q9NWV8 329 aa14.03□□□□□ -0.16
LINC00239-201ENST00000556973 MIS18AQ9NYP9 233 aa14.03□□□□□ -0.16
LINC00239-201ENST00000556973 TRIM35Q9UPQ4 493 aa14.03□□□□□ -0.16
LINC00239-201ENST00000556973 SNRPA1P09661 255 aaKnown RBP14.02□□□□□ -0.17
LINC00239-201ENST00000556973 RFC4P35249 363 aa14.02□□□□□ -0.17
LINC00239-201ENST00000556973 ARXQ96QS3 562 aa14.02□□□□□ -0.17
LINC00239-201ENST00000556973 USP16Q9Y5T5 823 aa14□□□□□ -0.17
LINC00239-201ENST00000556973 C4AP0C0L4 1744 aa13.99□□□□□ -0.17
LINC00239-201ENST00000556973 SOS1Q07889 1333 aaPredicted RBP13.99□□□□□ -0.17
LINC00239-201ENST00000556973 CANXP27824 592 aaKnown RBP13.99□□□□□ -0.17
LINC00239-201ENST00000556973 EIF4A1P60842 406 aaKnown RBP13.99□□□□□ -0.17
LINC00239-201ENST00000556973 NLGN1Q8N2Q7 840 aa13.99□□□□□ -0.17
LINC00239-201ENST00000556973 TSPYL4Q9UJ04 414 aa13.99□□□□□ -0.17
LINC00239-201ENST00000556973 ZBTB1Q9Y2K1 713 aa13.99□□□□□ -0.17
LINC00239-201ENST00000556973 A1BGP04217 495 aa13.98□□□□□ -0.17
LINC00239-201ENST00000556973 EIF5P55010 431 aaKnown RBP13.98□□□□□ -0.17
LINC00239-201ENST00000556973 NCBP3Q53F19 620 aaKnown RBP13.98□□□□□ -0.17
LINC00239-201ENST00000556973 MSL1Q68DK7 614 aa13.98□□□□□ -0.17
LINC00239-201ENST00000556973 A0A087WZG4 1122 aa13.97□□□□□ -0.17
LINC00239-201ENST00000556973 PRAMEF22A3QJZ6 481 aa13.97□□□□□ -0.17
LINC00239-201ENST00000556973 CHL1O00533 1208 aa13.97□□□□□ -0.17
LINC00239-201ENST00000556973 ZPR1O75312 459 aa13.97□□□□□ -0.17
LINC00239-201ENST00000556973 GIGYF1O75420 1035 aaPredicted RBP13.97□□□□□ -0.17
LINC00239-201ENST00000556973 GYS1P13807 737 aa13.97□□□□□ -0.17
LINC00239-201ENST00000556973 IL6STP40189 918 aaPredicted RBP13.97□□□□□ -0.17
LINC00239-201ENST00000556973 CALD1Q05682 793 aaKnown RBP13.97□□□□□ -0.17
LINC00239-201ENST00000556973 FAM9BQ8IZU0 186 aa13.97□□□□□ -0.17
LINC00239-201ENST00000556973 LAS1LQ9Y4W2 734 aaKnown RBP13.97□□□□□ -0.17
LINC00239-201ENST00000556973 SRCAPQ6ZRS2 3230 aa13.96□□□□□ -0.17
LINC00239-201ENST00000556973 CCDC27Q2M243 656 aa13.96□□□□□ -0.17
LINC00239-201ENST00000556973 NPM2Q86SE8 214 aaKnown RBP13.96□□□□□ -0.17
LINC00239-201ENST00000556973 CFAP44Q96MT7 982 aa13.96□□□□□ -0.17
LINC00239-201ENST00000556973 SYT17Q9BSW7 474 aa13.96□□□□□ -0.17
LINC00239-201ENST00000556973 FHDC1Q9C0D6 1143 aaPredicted RBP13.96□□□□□ -0.17
LINC00239-201ENST00000556973 NARFQ9UHQ1 456 aa13.96□□□□□ -0.17
LINC00239-201ENST00000556973 LAMB4A4D0S4 1761 aa13.96□□□□□ -0.18
LINC00239-201ENST00000556973 COL15A1P39059 1388 aa13.96□□□□□ -0.18
LINC00239-201ENST00000556973 USP42Q9H9J4 1324 aaKnown RBP13.95□□□□□ -0.18
LINC00239-201ENST00000556973 CCER2I3L3R5 266 aa13.94□□□□□ -0.18
LINC00239-201ENST00000556973 USPL1Q5W0Q7 1092 aa13.94□□□□□ -0.18
LINC00239-201ENST00000556973 DIEXFQ68CQ4 756 aaKnown RBP13.94□□□□□ -0.18
LINC00239-201ENST00000556973 SRP68Q9UHB9 627 aaKnown RBP13.94□□□□□ -0.18
LINC00239-201ENST00000556973 MMP10P09238 476 aa13.93□□□□□ -0.18
LINC00239-201ENST00000556973 ZNF853P0CG23 659 aa13.93□□□□□ -0.18
LINC00239-201ENST00000556973 GNAI1P63096 354 aa13.93□□□□□ -0.18
LINC00239-201ENST00000556973 WWC1Q8IX03 1113 aa13.93□□□□□ -0.18
LINC00239-201ENST00000556973 IFT57Q9NWB7 429 aa13.93□□□□□ -0.18
LINC00239-201ENST00000556973 ZNF330Q9Y3S2 320 aaPredicted RBP13.93□□□□□ -0.18
LINC00239-201ENST00000556973 TM4SF1P30408 202 aa13.92□□□□□ -0.18
LINC00239-201ENST00000556973 FKBP8Q14318 412 aa13.92□□□□□ -0.18
LINC00239-201ENST00000556973 NGEFQ8N5V2 710 aa13.92□□□□□ -0.18
LINC00239-201ENST00000556973 CD2APQ9Y5K6 639 aa13.92□□□□□ -0.18
LINC00239-201ENST00000556973 PARP3Q9Y6F1 533 aa13.92□□□□□ -0.18
LINC00239-201ENST00000556973 DCAF8L1A6NGE4 600 aa13.91□□□□□ -0.18
LINC00239-201ENST00000556973 NBPF26B4DH59 902 aa13.91□□□□□ -0.18
LINC00239-201ENST00000556973 NBPF10Q6P3W6 841 aaKnown RBP13.91□□□□□ -0.18
LINC00239-201ENST00000556973 KLHL34Q8N239 644 aa13.91□□□□□ -0.18
LINC00239-201ENST00000556973 NBPF15Q8N660 670 aa13.91□□□□□ -0.18
LINC00239-201ENST00000556973 MBIPQ9NS73 344 aa13.91□□□□□ -0.18
LINC00239-201ENST00000556973 TBC1D2BQ9UPU7 963 aa13.91□□□□□ -0.18
LINC00239-201ENST00000556973 ERBB4Q15303 1308 aa13.9□□□□□ -0.18
LINC00239-201ENST00000556973 PIP4K2AP48426 406 aaPredicted RBP13.9□□□□□ -0.18
LINC00239-201ENST00000556973 DZIP3Q86Y13 1208 aaKnown RBP13.9□□□□□ -0.18
LINC00239-201ENST00000556973 BCL2L12Q9HB09 334 aa13.9□□□□□ -0.18
LINC00239-201ENST00000556973 SENP3-EIF4A1A0A087X0R7 540 aa13.89□□□□□ -0.19
LINC00239-201ENST00000556973 HOXB7P09629 217 aa13.89□□□□□ -0.19
LINC00239-201ENST00000556973 EIF2S2P20042 333 aaKnown RBP13.89□□□□□ -0.19
LINC00239-201ENST00000556973 WDR63Q8IWG1 891 aa13.89□□□□□ -0.19
LINC00239-201ENST00000556973 IL16Q14005 1332 aa13.89□□□□□ -0.19
LINC00239-201ENST00000556973 RGL2O15211 777 aa13.88□□□□□ -0.19
LINC00239-201ENST00000556973 CAMTA2O94983 1202 aa13.88□□□□□ -0.19
LINC00239-201ENST00000556973 CLEC4GQ6UXB4 293 aa13.88□□□□□ -0.19
LINC00239-201ENST00000556973 SALL2Q9Y467 1007 aaPredicted RBP13.88□□□□□ -0.19
LINC00239-201ENST00000556973 BCORQ6W2J9 1755 aa13.88□□□□□ -0.19
LINC00239-201ENST00000556973 SCN7AQ01118 1682 aa13.88□□□□□ -0.19
LINC00239-201ENST00000556973 KIF13BQ9NQT8 1826 aa13.87□□□□□ -0.19
LINC00239-201ENST00000556973 POLRMTO00411 1230 aaKnown RBP13.87□□□□□ -0.19
LINC00239-201ENST00000556973 MYL6BP14649 208 aa13.87□□□□□ -0.19
LINC00239-201ENST00000556973 NFIXQ14938 502 aa13.87□□□□□ -0.19
LINC00239-201ENST00000556973 KRT24Q2M2I5 525 aa13.87□□□□□ -0.19
LINC00239-201ENST00000556973 ZNF652Q9Y2D9 606 aa13.87□□□□□ -0.19
LINC00239-201ENST00000556973 TGFB2P61812 414 aa13.86□□□□□ -0.19
LINC00239-201ENST00000556973 DDR1Q08345 913 aa13.86□□□□□ -0.19
LINC00239-201ENST00000556973 PDIA6Q15084 440 aa13.86□□□□□ -0.19
LINC00239-201ENST00000556973 DUSP27Q5VZP5 1158 aa13.86□□□□□ -0.19
LINC00239-201ENST00000556973 MIER1Q8N108 512 aa13.86□□□□□ -0.19
LINC00239-201ENST00000556973 NLGN2Q8NFZ4 835 aa13.86□□□□□ -0.19
LINC00239-201ENST00000556973 SETDB2Q96T68 719 aa13.86□□□□□ -0.19
LINC00239-201ENST00000556973 CHMP4AQ9BY43 222 aa13.86□□□□□ -0.19
LINC00239-201ENST00000556973 AFDNP55196 1824 aaKnown RBP13.85□□□□□ -0.19
LINC00239-201ENST00000556973 ERVV-1B6SEH8 477 aa13.85□□□□□ -0.19
LINC00239-201ENST00000556973 SERPINB2P05120 415 aa13.85□□□□□ -0.19
LINC00239-201ENST00000556973 TBC1D9BQ66K14 1250 aa13.85□□□□□ -0.19
LINC00239-201ENST00000556973 DDX21Q9NR30 783 aaKnown RBP eCLIP13.85□□□□□ -0.19
LINC00239-201ENST00000556973 NRXN2Q9P2S2 1712 aa13.84□□□□□ -0.19
LINC00239-201ENST00000556973 HDGFL1Q5TGJ6 251 aa13.84□□□□□ -0.19
LINC00239-201ENST00000556973 KIF6Q6ZMV9 814 aa13.84□□□□□ -0.19
LINC00239-201ENST00000556973 BICDL1Q6ZP65 573 aa13.84□□□□□ -0.19
LINC00239-201ENST00000556973 NECTIN2Q92692 538 aa13.84□□□□□ -0.19
LINC00239-201ENST00000556973 DBF4Q9UBU7 674 aaPredicted RBP13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms