RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 ZFP42Q96MM3 310 aa10.17□□□□□ -0.78
LINC00643-204ENST00000555934 CABP1Q9NZU7 370 aa10.17□□□□□ -0.78
LINC00643-204ENST00000555934 CDK2AP1O14519 115 aa10.16□□□□□ -0.78
LINC00643-204ENST00000555934 CTSOP43234 321 aaPredicted RBP10.16□□□□□ -0.78
LINC00643-204ENST00000555934 SH3PXD2AQ5TCZ1 1133 aa10.16□□□□□ -0.78
LINC00643-204ENST00000555934 IQSEC3Q9UPP2 1182 aaPredicted RBP10.16□□□□□ -0.78
LINC00643-204ENST00000555934 FOXO3O43524 673 aa10.15□□□□□ -0.78
LINC00643-204ENST00000555934 MTMR3Q13615 1198 aa10.15□□□□□ -0.78
LINC00643-204ENST00000555934 GTF3C2Q8WUA4 911 aaPredicted RBP10.15□□□□□ -0.78
LINC00643-204ENST00000555934 NGLY1Q96IV0 654 aa10.15□□□□□ -0.78
LINC00643-204ENST00000555934 ZNF232Q9UNY5 417 aa10.15□□□□□ -0.78
LINC00643-204ENST00000555934 MTMR7Q9Y216 660 aa10.15□□□□□ -0.78
LINC00643-204ENST00000555934 GTF2E1P29083 439 aaPredicted RBP10.14□□□□□ -0.79
LINC00643-204ENST00000555934 PSMA6P60900 246 aaKnown RBP10.14□□□□□ -0.79
LINC00643-204ENST00000555934 FOXD4L5Q5VV16 416 aaPredicted RBP10.14□□□□□ -0.79
LINC00643-204ENST00000555934 GMPR2Q9P2T1 348 aaKnown RBP10.14□□□□□ -0.79
LINC00643-204ENST00000555934 CHMP3Q9Y3E7 222 aa10.14□□□□□ -0.79
LINC00643-204ENST00000555934 ZDHHC1Q8WTX9 485 aa10.13□□□□□ -0.79
LINC00643-204ENST00000555934 C2orf49Q9BVC5 232 aaPredicted RBP10.13□□□□□ -0.79
LINC00643-204ENST00000555934 HCN4Q9Y3Q4 1203 aa10.13□□□□□ -0.79
LINC00643-204ENST00000555934 CCDC9Q9Y3X0 531 aaKnown RBP10.13□□□□□ -0.79
LINC00643-204ENST00000555934 DNMT3AQ9Y6K1 912 aaPredicted RBP10.13□□□□□ -0.79
LINC00643-204ENST00000555934 SERTM1A2A2V5 107 aa10.12□□□□□ -0.79
LINC00643-204ENST00000555934 SOWAHDA6NJG2 315 aa10.12□□□□□ -0.79
LINC00643-204ENST00000555934 PTCD1O75127 700 aaKnown RBP10.12□□□□□ -0.79
LINC00643-204ENST00000555934 PHKA2P46019 1235 aa10.12□□□□□ -0.79
LINC00643-204ENST00000555934 SND1Q7KZF4 910 aaKnown RBP eCLIP10.12□□□□□ -0.79
LINC00643-204ENST00000555934 PPARGC1BQ86YN6 1023 aaKnown RBP10.12□□□□□ -0.79
LINC00643-204ENST00000555934 NBPF15Q8N660 670 aa10.12□□□□□ -0.79
LINC00643-204ENST00000555934 SAP130Q9H0E3 1048 aa10.12□□□□□ -0.79
LINC00643-204ENST00000555934 SENP2Q9HC62 589 aa10.12□□□□□ -0.79
LINC00643-204ENST00000555934 SOS2Q07890 1332 aaPredicted RBP10.11□□□□□ -0.79
LINC00643-204ENST00000555934 FIGNL2A6NMB9 653 aa10.11□□□□□ -0.79
LINC00643-204ENST00000555934 TTLL8A6PVC2 850 aa10.11□□□□□ -0.79
LINC00643-204ENST00000555934 H3BRB1 525 aa10.11□□□□□ -0.79
LINC00643-204ENST00000555934 NOS2P35228 1153 aa10.11□□□□□ -0.79
LINC00643-204ENST00000555934 RNF144AP50876 292 aaPredicted RBP10.11□□□□□ -0.79
LINC00643-204ENST00000555934 MFAP1P55081 439 aaKnown RBP10.11□□□□□ -0.79
LINC00643-204ENST00000555934 PRICKLE2Q7Z3G6 844 aa10.11□□□□□ -0.79
LINC00643-204ENST00000555934 L3MBTL2Q969R5 705 aa10.11□□□□□ -0.79
LINC00643-204ENST00000555934 KIFC2Q96AC6 838 aa10.11□□□□□ -0.79
LINC00643-204ENST00000555934 TRIM47Q96LD4 638 aa10.11□□□□□ -0.79
LINC00643-204ENST00000555934 GRIP2Q9C0E4 1043 aa10.11□□□□□ -0.79
LINC00643-204ENST00000555934 TUT1Q9H6E5 874 aaKnown RBP10.11□□□□□ -0.79
LINC00643-204ENST00000555934 BIN2Q9UBW5 565 aaPredicted RBP10.11□□□□□ -0.79
LINC00643-204ENST00000555934 EML1O00423 815 aa10.1□□□□□ -0.79
LINC00643-204ENST00000555934 GPC1P35052 558 aa10.1□□□□□ -0.79
LINC00643-204ENST00000555934 PLA2G4AP47712 749 aa10.1□□□□□ -0.79
LINC00643-204ENST00000555934 GNASQ5JWF2 1037 aa10.1□□□□□ -0.79
LINC00643-204ENST00000555934 RHBDD1Q8TEB9 315 aa10.1□□□□□ -0.79
LINC00643-204ENST00000555934 NIFKQ9BYG3 293 aaKnown RBP10.1□□□□□ -0.79
LINC00643-204ENST00000555934 POU4F2Q12837 409 aa10.09□□□□□ -0.79
LINC00643-204ENST00000555934 NFX1Q12986 1120 aaKnown RBP10.09□□□□□ -0.79
LINC00643-204ENST00000555934 TEAD4Q15561 434 aa10.09□□□□□ -0.79
LINC00643-204ENST00000555934 C4orf17Q53FE4 359 aa10.09□□□□□ -0.79
LINC00643-204ENST00000555934 ZNF295-AS1Q8N0V1 137 aa10.09□□□□□ -0.79
LINC00643-204ENST00000555934 RNF217Q8TC41 542 aa10.09□□□□□ -0.79
LINC00643-204ENST00000555934 AIDAQ96BJ3 306 aa10.09□□□□□ -0.79
LINC00643-204ENST00000555934 WFS1O76024 890 aa10.08□□□□□ -0.8
LINC00643-204ENST00000555934 RHOQP17081 205 aa10.08□□□□□ -0.8
LINC00643-204ENST00000555934 GLYCTKQ8IVS8 523 aa10.08□□□□□ -0.8
LINC00643-204ENST00000555934 COL26A1Q96A83 441 aa10.08□□□□□ -0.8
LINC00643-204ENST00000555934 C11orf95C9JLR9 678 aaPredicted RBP10.07□□□□□ -0.8
LINC00643-204ENST00000555934 WIPF1O43516 503 aa10.07□□□□□ -0.8
LINC00643-204ENST00000555934 TXLNAP40222 546 aa10.07□□□□□ -0.8
LINC00643-204ENST00000555934 CCDC27Q2M243 656 aa10.07□□□□□ -0.8
LINC00643-204ENST00000555934 COX20Q5RI15 118 aa10.07□□□□□ -0.8
LINC00643-204ENST00000555934 STAG2Q8N3U4 1231 aa10.07□□□□□ -0.8
LINC00643-204ENST00000555934 QTRT2Q9H974 415 aaKnown RBP10.07□□□□□ -0.8
LINC00643-204ENST00000555934 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.07□□□□□ -0.8
LINC00643-204ENST00000555934 DNMT3LQ9UJW3 386 aa10.07□□□□□ -0.8
LINC00643-204ENST00000555934 MAN1A2O60476 641 aa10.06□□□□□ -0.8
LINC00643-204ENST00000555934 ICMTO60725 284 aa10.06□□□□□ -0.8
LINC00643-204ENST00000555934 C16orf46Q6P387 395 aa10.06□□□□□ -0.8
LINC00643-204ENST00000555934 ALDH16A1Q8IZ83 802 aa10.06□□□□□ -0.8
LINC00643-204ENST00000555934 PHACTR1Q9C0D0 580 aa10.06□□□□□ -0.8
LINC00643-204ENST00000555934 SNRPBP14678 240 aaKnown RBP10.05□□□□□ -0.8
LINC00643-204ENST00000555934 FKBP4Q02790 459 aaKnown RBP eCLIP10.05□□□□□ -0.8
LINC00643-204ENST00000555934 LYSMD3Q7Z3D4 306 aa10.05□□□□□ -0.8
LINC00643-204ENST00000555934 HELQQ8TDG4 1101 aa10.05□□□□□ -0.8
LINC00643-204ENST00000555934 EGFL7Q9UHF1 273 aa10.05□□□□□ -0.8
LINC00643-204ENST00000555934 LRFN2Q9ULH4 789 aa10.05□□□□□ -0.8
LINC00643-204ENST00000555934 SOBPA7XYQ1 873 aa10.04□□□□□ -0.8
LINC00643-204ENST00000555934 KLK14Q9P0G3 267 aa10.04□□□□□ -0.8
LINC00643-204ENST00000555934 MPSTP25325 297 aa10.03□□□□□ -0.8
LINC00643-204ENST00000555934 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.03□□□□□ -0.8
LINC00643-204ENST00000555934 NBPF10Q6P3W6 841 aaKnown RBP10.03□□□□□ -0.8
LINC00643-204ENST00000555934 SPATA31C2B4DYI2 1134 aa10.02□□□□□ -0.81
LINC00643-204ENST00000555934 HIRAP54198 1017 aaPredicted RBP10.02□□□□□ -0.81
LINC00643-204ENST00000555934 SF3B2Q13435 895 aaKnown RBP10.02□□□□□ -0.81
LINC00643-204ENST00000555934 DGKZQ13574 1117 aa10.02□□□□□ -0.81
LINC00643-204ENST00000555934 POTEAQ6S8J7 498 aa10.02□□□□□ -0.81
LINC00643-204ENST00000555934 TNFRSF10BO14763 440 aa10.01□□□□□ -0.81
LINC00643-204ENST00000555934 NBPF1Q3BBV0 1214 aa10.01□□□□□ -0.81
LINC00643-204ENST00000555934 LCE2CQ5TA81 110 aa10.01□□□□□ -0.81
LINC00643-204ENST00000555934 STK17AQ9UEE5 414 aa10.01□□□□□ -0.81
LINC00643-204ENST00000555934 RTN1Q16799 776 aa10□□□□□ -0.81
LINC00643-204ENST00000555934 FAM26DQ5JW98 314 aa10□□□□□ -0.81
LINC00643-204ENST00000555934 RHPN1Q8TCX5 695 aa10□□□□□ -0.81
LINC00643-204ENST00000555934 KLRG1Q96E93 195 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms